Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AL928711.1-201ENST00000570165 459 ntBASIC19.29■□□□□ 0.68
CDX2Q99626 Z92544.3-201ENST00000624747 417 ntBASIC19.29■□□□□ 0.68
CDX2Q99626 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.29■□□□□ 0.68
CDX2Q99626 HEIH-201ENST00000623091 1652 ntBASIC19.29■□□□□ 0.68
CDX2Q99626 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDX2Q99626 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
CDX2Q99626 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.28■□□□□ 0.68
CDX2Q99626 KRT18P27-201ENST00000427733 1299 ntBASIC19.28■□□□□ 0.68
CDX2Q99626 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.28■□□□□ 0.68
CDX2Q99626 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.28■□□□□ 0.68
CDX2Q99626 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.28■□□□□ 0.68
CDX2Q99626 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CDX2Q99626 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.28■□□□□ 0.68
CDX2Q99626 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.28■□□□□ 0.68
CDX2Q99626 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.28■□□□□ 0.68
CDX2Q99626 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.28■□□□□ 0.68
CDX2Q99626 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CDX2Q99626 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CDX2Q99626 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX2Q99626 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDX2Q99626 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDX2Q99626 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDX2Q99626 AC125634.1-201ENST00000438758 1403 ntBASIC19.27■□□□□ 0.68
CDX2Q99626 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CDX2Q99626 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDX2Q99626 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CDX2Q99626 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDX2Q99626 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CDX2Q99626 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.27■□□□□ 0.68
CDX2Q99626 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.27■□□□□ 0.68
CDX2Q99626 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC19.27■□□□□ 0.68
CDX2Q99626 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.27■□□□□ 0.68
CDX2Q99626 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.27■□□□□ 0.68
CDX2Q99626 AC005225.4-201ENST00000557330 545 ntBASIC19.27■□□□□ 0.68
CDX2Q99626 AC018845.2-201ENST00000568326 409 ntBASIC19.27■□□□□ 0.68
CDX2Q99626 AL008721.1-201ENST00000609964 604 ntBASIC19.27■□□□□ 0.68
CDX2Q99626 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
CDX2Q99626 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDX2Q99626 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.27■□□□□ 0.68
CDX2Q99626 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.67
CDX2Q99626 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CDX2Q99626 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CDX2Q99626 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CDX2Q99626 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CDX2Q99626 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDX2Q99626 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDX2Q99626 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.26■□□□□ 0.67
CDX2Q99626 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDX2Q99626 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDX2Q99626 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.26■□□□□ 0.67
CDX2Q99626 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
CDX2Q99626 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDX2Q99626 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.26■□□□□ 0.67
CDX2Q99626 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDX2Q99626 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDX2Q99626 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CDX2Q99626 AC073621.1-201ENST00000392730 636 ntBASIC19.26■□□□□ 0.67
CDX2Q99626 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.26■□□□□ 0.67
CDX2Q99626 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDX2Q99626 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.26■□□□□ 0.67
CDX2Q99626 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC19.26■□□□□ 0.67
CDX2Q99626 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CDX2Q99626 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.26■□□□□ 0.67
CDX2Q99626 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.26■□□□□ 0.67
CDX2Q99626 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.26■□□□□ 0.67
CDX2Q99626 DUT-210ENST00000559935 569 ntTSL 3 BASIC19.26■□□□□ 0.67
CDX2Q99626 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.26■□□□□ 0.67
CDX2Q99626 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.26■□□□□ 0.67
CDX2Q99626 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDX2Q99626 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.26■□□□□ 0.67
CDX2Q99626 GPR89P-201ENST00000407924 1495 ntBASIC19.26■□□□□ 0.67
CDX2Q99626 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDX2Q99626 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.26■□□□□ 0.67
CDX2Q99626 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDX2Q99626 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX2Q99626 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.25■□□□□ 0.67
CDX2Q99626 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.25■□□□□ 0.67
CDX2Q99626 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CDX2Q99626 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDX2Q99626 LINC01521-201ENST00000504184 1943 ntBASIC19.25■□□□□ 0.67
CDX2Q99626 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX2Q99626 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDX2Q99626 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX2Q99626 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDX2Q99626 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms