Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 KRT8P7-201ENST00000533003 1432 ntBASIC18.26■□□□□ 0.51
VPS13AQ96RL7 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 AC138761.1-201ENST00000584393 385 ntBASIC18.26■□□□□ 0.51
VPS13AQ96RL7 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS13AQ96RL7 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 TP73-AS1-210ENST00000637775 1455 ntBASIC18.25■□□□□ 0.51
VPS13AQ96RL7 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.25■□□□□ 0.51
VPS13AQ96RL7 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS13AQ96RL7 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 AL139400.1-201ENST00000366220 510 ntBASIC18.24■□□□□ 0.51
VPS13AQ96RL7 AC092910.1-201ENST00000482027 1129 ntBASIC18.24■□□□□ 0.51
VPS13AQ96RL7 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 AC006333.2-201ENST00000607957 2099 ntBASIC18.24■□□□□ 0.51
VPS13AQ96RL7 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 AC027612.4-201ENST00000605371 583 ntBASIC18.24■□□□□ 0.51
VPS13AQ96RL7 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 AP002472.1-201ENST00000577490 586 ntBASIC18.24■□□□□ 0.51
VPS13AQ96RL7 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS13AQ96RL7 AC099778.1-201ENST00000568593 1911 ntBASIC18.24■□□□□ 0.51
VPS13AQ96RL7 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 RBM7-207ENST00000544582 692 ntTSL 3 BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS13AQ96RL7 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 RNA5SP416-201ENST00000516838 111 ntBASIC18.22■□□□□ 0.51
VPS13AQ96RL7 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.22■□□□□ 0.51
VPS13AQ96RL7 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 INTS4P1-201ENST00000438455 1935 ntBASIC18.22■□□□□ 0.51
VPS13AQ96RL7 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 RCN1P2-201ENST00000398357 915 ntBASIC18.22■□□□□ 0.51
VPS13AQ96RL7 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms