Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SOX4Q06945 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.76■□□□□ 0.75
SOX4Q06945 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.76■□□□□ 0.75
SOX4Q06945 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SOX4Q06945 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SOX4Q06945 AC009102.3-201ENST00000623118 1491 ntBASIC19.75■□□□□ 0.75
SOX4Q06945 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX4Q06945 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.75■□□□□ 0.75
SOX4Q06945 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.75■□□□□ 0.75
SOX4Q06945 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX4Q06945 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.75■□□□□ 0.75
SOX4Q06945 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.75■□□□□ 0.75
SOX4Q06945 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.75■□□□□ 0.75
SOX4Q06945 GPR32P1-201ENST00000601788 811 ntBASIC19.75■□□□□ 0.75
SOX4Q06945 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
SOX4Q06945 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SOX4Q06945 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX4Q06945 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX4Q06945 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX4Q06945 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX4Q06945 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.75■□□□□ 0.75
SOX4Q06945 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.74■□□□□ 0.75
SOX4Q06945 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.74■□□□□ 0.75
SOX4Q06945 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.74■□□□□ 0.75
SOX4Q06945 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.74■□□□□ 0.75
SOX4Q06945 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.74■□□□□ 0.75
SOX4Q06945 KRT126P-201ENST00000549467 1181 ntBASIC19.74■□□□□ 0.75
SOX4Q06945 TPSP2-201ENST00000561760 610 ntBASIC19.74■□□□□ 0.75
SOX4Q06945 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
SOX4Q06945 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
SOX4Q06945 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SOX4Q06945 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.73■□□□□ 0.75
SOX4Q06945 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.73■□□□□ 0.75
SOX4Q06945 CROCCP3-202ENST00000420820 1947 ntBASIC19.73■□□□□ 0.75
SOX4Q06945 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SOX4Q06945 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.73■□□□□ 0.75
SOX4Q06945 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.73■□□□□ 0.75
SOX4Q06945 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SOX4Q06945 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 KRT18P1-202ENST00000452408 1331 ntBASIC19.73■□□□□ 0.75
SOX4Q06945 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SOX4Q06945 AL031598.1-201ENST00000561511 1773 ntBASIC19.72■□□□□ 0.75
SOX4Q06945 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX4Q06945 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SOX4Q06945 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SOX4Q06945 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SOX4Q06945 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.72■□□□□ 0.75
SOX4Q06945 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX4Q06945 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX4Q06945 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX4Q06945 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.72■□□□□ 0.75
SOX4Q06945 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.72■□□□□ 0.75
SOX4Q06945 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.72■□□□□ 0.75
SOX4Q06945 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.72■□□□□ 0.75
SOX4Q06945 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SOX4Q06945 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.72■□□□□ 0.75
SOX4Q06945 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.72■□□□□ 0.75
SOX4Q06945 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
SOX4Q06945 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.72■□□□□ 0.75
SOX4Q06945 AL024508.2-201ENST00000607749 1894 ntBASIC19.72■□□□□ 0.75
SOX4Q06945 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.72■□□□□ 0.75
SOX4Q06945 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.72■□□□□ 0.75
SOX4Q06945 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.72■□□□□ 0.75
SOX4Q06945 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.72■□□□□ 0.75
SOX4Q06945 KRT89P-201ENST00000620027 1478 ntBASIC19.72■□□□□ 0.75
SOX4Q06945 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX4Q06945 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SOX4Q06945 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.72■□□□□ 0.75
SOX4Q06945 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SOX4Q06945 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SOX4Q06945 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SOX4Q06945 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms