Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 PMS2P1-201ENST00000431037 1228 ntBASIC21.02■□□□□ 0.96
CCNA1P78396 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCNA1P78396 AF186996.4-201ENST00000467186 377 ntBASIC21.02■□□□□ 0.96
CCNA1P78396 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC21.02■□□□□ 0.96
CCNA1P78396 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC21.02■□□□□ 0.96
CCNA1P78396 AC113404.2-201ENST00000507884 177 ntBASIC21.02■□□□□ 0.96
CCNA1P78396 AC096582.2-201ENST00000510860 516 ntBASIC21.02■□□□□ 0.96
CCNA1P78396 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC21.02■□□□□ 0.96
CCNA1P78396 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC21.02■□□□□ 0.96
CCNA1P78396 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC21.02■□□□□ 0.96
CCNA1P78396 AC114341.1-201ENST00000618070 349 ntBASIC21.02■□□□□ 0.96
CCNA1P78396 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNA1P78396 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CCNA1P78396 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNA1P78396 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNA1P78396 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNA1P78396 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNA1P78396 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCNA1P78396 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCNA1P78396 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCNA1P78396 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CCNA1P78396 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CCNA1P78396 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC21.02■□□□□ 0.95
CCNA1P78396 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.02■□□□□ 0.95
CCNA1P78396 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CCNA1P78396 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCNA1P78396 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNA1P78396 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.01■□□□□ 0.95
CCNA1P78396 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.01■□□□□ 0.95
CCNA1P78396 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCNA1P78396 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNA1P78396 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNA1P78396 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNA1P78396 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC21.01■□□□□ 0.95
CCNA1P78396 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CCNA1P78396 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC21.01■□□□□ 0.95
CCNA1P78396 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC21.01■□□□□ 0.95
CCNA1P78396 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNA1P78396 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CCNA1P78396 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNA1P78396 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCNA1P78396 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNA1P78396 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CCNA1P78396 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNA1P78396 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNA1P78396 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCNA1P78396 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC21.01■□□□□ 0.95
CCNA1P78396 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCNA1P78396 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCNA1P78396 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21■□□□□ 0.95
CCNA1P78396 NFYC-AS1-201ENST00000606277 1687 ntBASIC21■□□□□ 0.95
CCNA1P78396 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCNA1P78396 MED22-202ENST00000371999 987 ntTSL 3 BASIC21■□□□□ 0.95
CCNA1P78396 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCNA1P78396 MIR149-201ENST00000384879 89 ntBASIC21■□□□□ 0.95
CCNA1P78396 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CCNA1P78396 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CCNA1P78396 KRT18P67-201ENST00000432816 1264 ntBASIC21■□□□□ 0.95
CCNA1P78396 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CCNA1P78396 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC21■□□□□ 0.95
CCNA1P78396 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC21■□□□□ 0.95
CCNA1P78396 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC21■□□□□ 0.95
CCNA1P78396 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCNA1P78396 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21■□□□□ 0.95
CCNA1P78396 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
CCNA1P78396 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CCNA1P78396 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCNA1P78396 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCNA1P78396 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCNA1P78396 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCNA1P78396 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.99■□□□□ 0.95
CCNA1P78396 MTMR9LP-203ENST00000426597 1545 ntBASIC20.99■□□□□ 0.95
CCNA1P78396 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.99■□□□□ 0.95
CCNA1P78396 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCNA1P78396 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCNA1P78396 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CCNA1P78396 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCNA1P78396 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCNA1P78396 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCNA1P78396 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCNA1P78396 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CCNA1P78396 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.99■□□□□ 0.95
CCNA1P78396 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.99■□□□□ 0.95
CCNA1P78396 AC093909.1-201ENST00000504731 1122 ntBASIC20.99■□□□□ 0.95
CCNA1P78396 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.99■□□□□ 0.95
CCNA1P78396 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.99■□□□□ 0.95
CCNA1P78396 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.99■□□□□ 0.95
CCNA1P78396 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CCNA1P78396 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.99■□□□□ 0.95
CCNA1P78396 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.99■□□□□ 0.95
CCNA1P78396 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.99■□□□□ 0.95
CCNA1P78396 AF228730.7-201ENST00000641842 219 ntBASIC20.99■□□□□ 0.95
CCNA1P78396 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.99■□□□□ 0.95
CCNA1P78396 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.99■□□□□ 0.95
CCNA1P78396 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCNA1P78396 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CCNA1P78396 IL9RP2-201ENST00000423948 1312 ntBASIC20.99■□□□□ 0.95
CCNA1P78396 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCNA1P78396 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCNA1P78396 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms