Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.32■□□□□ 0.68
EPHB3P54753 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.32■□□□□ 0.68
EPHB3P54753 AC104819.1-201ENST00000504587 486 ntBASIC19.32■□□□□ 0.68
EPHB3P54753 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.32■□□□□ 0.68
EPHB3P54753 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.32■□□□□ 0.68
EPHB3P54753 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EPHB3P54753 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
EPHB3P54753 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
EPHB3P54753 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EPHB3P54753 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.32■□□□□ 0.68
EPHB3P54753 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EPHB3P54753 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
EPHB3P54753 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
EPHB3P54753 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
EPHB3P54753 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.32■□□□□ 0.68
EPHB3P54753 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.32■□□□□ 0.68
EPHB3P54753 AL353692.3-201ENST00000407031 1396 ntBASIC19.32■□□□□ 0.68
EPHB3P54753 AL049812.1-201ENST00000432563 2267 ntBASIC19.31■□□□□ 0.68
EPHB3P54753 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.31■□□□□ 0.68
EPHB3P54753 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.31■□□□□ 0.68
EPHB3P54753 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EPHB3P54753 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
EPHB3P54753 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.31■□□□□ 0.68
EPHB3P54753 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EPHB3P54753 AC004870.1-201ENST00000315132 882 ntBASIC19.31■□□□□ 0.68
EPHB3P54753 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
EPHB3P54753 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.31■□□□□ 0.68
EPHB3P54753 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.31■□□□□ 0.68
EPHB3P54753 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.31■□□□□ 0.68
EPHB3P54753 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
EPHB3P54753 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.31■□□□□ 0.68
EPHB3P54753 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.31■□□□□ 0.68
EPHB3P54753 AL121772.3-201ENST00000610840 674 ntBASIC19.31■□□□□ 0.68
EPHB3P54753 AC124864.1-201ENST00000623408 392 ntBASIC19.31■□□□□ 0.68
EPHB3P54753 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.31■□□□□ 0.68
EPHB3P54753 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
EPHB3P54753 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EPHB3P54753 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EPHB3P54753 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
EPHB3P54753 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
EPHB3P54753 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EPHB3P54753 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EPHB3P54753 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EPHB3P54753 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EPHB3P54753 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
EPHB3P54753 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.3■□□□□ 0.68
EPHB3P54753 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
EPHB3P54753 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
EPHB3P54753 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
EPHB3P54753 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
EPHB3P54753 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
EPHB3P54753 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
EPHB3P54753 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.3■□□□□ 0.68
EPHB3P54753 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.3■□□□□ 0.68
EPHB3P54753 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.3■□□□□ 0.68
EPHB3P54753 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
EPHB3P54753 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.3■□□□□ 0.68
EPHB3P54753 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.3■□□□□ 0.68
EPHB3P54753 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.3■□□□□ 0.68
EPHB3P54753 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
EPHB3P54753 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.3■□□□□ 0.68
EPHB3P54753 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
EPHB3P54753 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
EPHB3P54753 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
EPHB3P54753 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.3■□□□□ 0.68
EPHB3P54753 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
EPHB3P54753 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
EPHB3P54753 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.29■□□□□ 0.68
EPHB3P54753 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
EPHB3P54753 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
EPHB3P54753 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
EPHB3P54753 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
EPHB3P54753 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
EPHB3P54753 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
EPHB3P54753 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
EPHB3P54753 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
EPHB3P54753 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
EPHB3P54753 MIR149-201ENST00000384879 89 ntBASIC19.29■□□□□ 0.68
EPHB3P54753 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
EPHB3P54753 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.29■□□□□ 0.68
EPHB3P54753 TSPY19P-201ENST00000418461 509 ntBASIC19.29■□□□□ 0.68
EPHB3P54753 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.29■□□□□ 0.68
EPHB3P54753 TSPY18P-201ENST00000441642 509 ntBASIC19.29■□□□□ 0.68
EPHB3P54753 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.29■□□□□ 0.68
EPHB3P54753 AC091304.2-201ENST00000564639 760 ntBASIC19.29■□□□□ 0.68
EPHB3P54753 AC074051.2-201ENST00000565115 352 ntBASIC19.29■□□□□ 0.68
EPHB3P54753 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.29■□□□□ 0.68
EPHB3P54753 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.29■□□□□ 0.68
EPHB3P54753 LINC01711-201ENST00000598340 967 ntBASIC19.29■□□□□ 0.68
EPHB3P54753 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
EPHB3P54753 Z69720.1-201ENST00000601483 472 ntBASIC19.29■□□□□ 0.68
EPHB3P54753 AL592071.1-201ENST00000611956 408 ntBASIC19.29■□□□□ 0.68
EPHB3P54753 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
EPHB3P54753 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
EPHB3P54753 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
EPHB3P54753 AC233702.3-201ENST00000578656 1387 ntBASIC19.29■□□□□ 0.68
EPHB3P54753 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
EPHB3P54753 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
EPHB3P54753 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
EPHB3P54753 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms