Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC30.93■■■□□ 2.54
CUX1P39880 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC30.93■■■□□ 2.54
CUX1P39880 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC30.93■■■□□ 2.54
CUX1P39880 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC30.93■■■□□ 2.54
CUX1P39880 AC025062.2-201ENST00000605477 670 ntBASIC30.93■■■□□ 2.54
CUX1P39880 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
CUX1P39880 AC055717.3-201ENST00000622967 595 ntBASIC30.93■■■□□ 2.54
CUX1P39880 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC30.93■■■□□ 2.54
CUX1P39880 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
CUX1P39880 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC30.93■■■□□ 2.54
CUX1P39880 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
CUX1P39880 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CUX1P39880 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CUX1P39880 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CUX1P39880 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC30.93■■■□□ 2.54
CUX1P39880 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC30.93■■■□□ 2.54
CUX1P39880 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
CUX1P39880 AC098831.1-202ENST00000438821 336 ntBASIC30.93■■■□□ 2.54
CUX1P39880 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC30.93■■■□□ 2.54
CUX1P39880 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC30.93■■■□□ 2.54
CUX1P39880 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
CUX1P39880 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC30.92■■■□□ 2.54
CUX1P39880 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
CUX1P39880 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
CUX1P39880 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
CUX1P39880 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
CUX1P39880 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC30.92■■■□□ 2.54
CUX1P39880 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
CUX1P39880 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC30.92■■■□□ 2.54
CUX1P39880 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
CUX1P39880 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
CUX1P39880 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
CUX1P39880 AC068472.1-201ENST00000474589 881 ntBASIC30.92■■■□□ 2.54
CUX1P39880 NMU-202ENST00000505262 693 ntTSL 3 BASIC30.92■■■□□ 2.54
CUX1P39880 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC30.92■■■□□ 2.54
CUX1P39880 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC30.92■■■□□ 2.54
CUX1P39880 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC30.92■■■□□ 2.54
CUX1P39880 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC30.92■■■□□ 2.54
CUX1P39880 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC30.92■■■□□ 2.54
CUX1P39880 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
CUX1P39880 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC30.91■■■□□ 2.54
CUX1P39880 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
CUX1P39880 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC30.91■■■□□ 2.54
CUX1P39880 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
CUX1P39880 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC30.91■■■□□ 2.54
CUX1P39880 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
CUX1P39880 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC30.91■■■□□ 2.54
CUX1P39880 AC104109.2-201ENST00000602919 1418 ntBASIC30.91■■■□□ 2.54
CUX1P39880 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC30.91■■■□□ 2.54
CUX1P39880 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
CUX1P39880 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC30.91■■■□□ 2.54
CUX1P39880 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC30.91■■■□□ 2.54
CUX1P39880 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
CUX1P39880 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
CUX1P39880 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC30.9■■■□□ 2.54
CUX1P39880 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC30.9■■■□□ 2.54
CUX1P39880 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC30.9■■■□□ 2.54
CUX1P39880 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC30.9■■■□□ 2.54
CUX1P39880 CYGB-205ENST00000590175 830 ntTSL 3 BASIC30.9■■■□□ 2.54
CUX1P39880 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
CUX1P39880 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC30.9■■■□□ 2.54
CUX1P39880 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC30.9■■■□□ 2.54
CUX1P39880 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CUX1P39880 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
CUX1P39880 ZNF259P1-201ENST00000407656 1365 ntBASIC30.89■■■□□ 2.54
CUX1P39880 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC30.89■■■□□ 2.54
CUX1P39880 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.54
CUX1P39880 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
CUX1P39880 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC30.89■■■□□ 2.54
CUX1P39880 AC005104.2-201ENST00000427818 678 ntBASIC30.89■■■□□ 2.54
CUX1P39880 RPS2P1-201ENST00000434010 821 ntBASIC30.89■■■□□ 2.54
CUX1P39880 HMGN1P19-201ENST00000436976 333 ntBASIC30.89■■■□□ 2.54
CUX1P39880 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC30.89■■■□□ 2.54
CUX1P39880 PNMT-203ENST00000581428 677 ntTSL 2 BASIC30.89■■■□□ 2.54
CUX1P39880 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
CUX1P39880 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC30.89■■■□□ 2.54
CUX1P39880 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
CUX1P39880 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC30.89■■■□□ 2.54
CUX1P39880 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC30.89■■■□□ 2.54
CUX1P39880 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC30.89■■■□□ 2.54
CUX1P39880 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.54
CUX1P39880 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC30.89■■■□□ 2.53
CUX1P39880 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CUX1P39880 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC30.88■■■□□ 2.53
CUX1P39880 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC30.88■■■□□ 2.53
CUX1P39880 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC30.88■■■□□ 2.53
CUX1P39880 AC010327.4-202ENST00000591484 748 ntBASIC30.88■■■□□ 2.53
CUX1P39880 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CUX1P39880 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC30.88■■■□□ 2.53
CUX1P39880 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CUX1P39880 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC30.88■■■□□ 2.53
CUX1P39880 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CUX1P39880 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CUX1P39880 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
CUX1P39880 AC009102.3-201ENST00000623118 1491 ntBASIC30.88■■■□□ 2.53
CUX1P39880 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC30.88■■■□□ 2.53
CUX1P39880 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CUX1P39880 AC125634.1-201ENST00000438758 1403 ntBASIC30.88■■■□□ 2.53
CUX1P39880 AP005117.1-201ENST00000584346 1413 ntBASIC30.88■■■□□ 2.53
CUX1P39880 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC30.88■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms