Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RFC4P35249 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RFC4P35249 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RFC4P35249 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RFC4P35249 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RFC4P35249 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RFC4P35249 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC23.21■■□□□ 1.31
RFC4P35249 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RFC4P35249 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RFC4P35249 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RFC4P35249 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.2■■□□□ 1.3
RFC4P35249 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RFC4P35249 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC23.2■■□□□ 1.3
RFC4P35249 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
RFC4P35249 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC23.2■■□□□ 1.3
RFC4P35249 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RFC4P35249 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RFC4P35249 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RFC4P35249 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC23.2■■□□□ 1.3
RFC4P35249 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RFC4P35249 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC23.2■■□□□ 1.3
RFC4P35249 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC23.2■■□□□ 1.3
RFC4P35249 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC23.2■■□□□ 1.3
RFC4P35249 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RFC4P35249 GZMM-202ENST00000592501 941 ntTSL 3 BASIC23.2■■□□□ 1.3
RFC4P35249 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC23.2■■□□□ 1.3
RFC4P35249 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RFC4P35249 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
RFC4P35249 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
RFC4P35249 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RFC4P35249 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC23.2■■□□□ 1.3
RFC4P35249 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC23.2■■□□□ 1.3
RFC4P35249 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
RFC4P35249 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
RFC4P35249 AL157384.1-201ENST00000445995 2473 ntBASIC23.19■■□□□ 1.3
RFC4P35249 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC23.19■■□□□ 1.3
RFC4P35249 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC23.19■■□□□ 1.3
RFC4P35249 AP001269.4-201ENST00000609611 512 ntBASIC23.19■■□□□ 1.3
RFC4P35249 AL691403.2-201ENST00000618460 490 ntBASIC23.19■■□□□ 1.3
RFC4P35249 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RFC4P35249 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
RFC4P35249 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RFC4P35249 AC112777.1-201ENST00000540175 1423 ntBASIC23.18■■□□□ 1.3
RFC4P35249 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RFC4P35249 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RFC4P35249 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC23.18■■□□□ 1.3
RFC4P35249 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC23.18■■□□□ 1.3
RFC4P35249 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RFC4P35249 AC141586.3-201ENST00000562166 1838 ntBASIC23.18■■□□□ 1.3
RFC4P35249 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
RFC4P35249 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC23.18■■□□□ 1.3
RFC4P35249 AC113404.2-201ENST00000507884 177 ntBASIC23.18■■□□□ 1.3
RFC4P35249 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC23.18■■□□□ 1.3
RFC4P35249 PGAM5P1-201ENST00000518923 814 ntBASIC23.18■■□□□ 1.3
RFC4P35249 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RFC4P35249 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC23.18■■□□□ 1.3
RFC4P35249 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC23.18■■□□□ 1.3
RFC4P35249 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC23.18■■□□□ 1.3
RFC4P35249 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC23.18■■□□□ 1.3
RFC4P35249 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RFC4P35249 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
RFC4P35249 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC23.18■■□□□ 1.3
RFC4P35249 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RFC4P35249 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RFC4P35249 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
RFC4P35249 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
RFC4P35249 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RFC4P35249 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RFC4P35249 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
RFC4P35249 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RFC4P35249 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC23.17■■□□□ 1.3
RFC4P35249 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC23.17■■□□□ 1.3
RFC4P35249 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RFC4P35249 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC23.17■■□□□ 1.3
RFC4P35249 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
RFC4P35249 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RFC4P35249 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
RFC4P35249 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RFC4P35249 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC23.17■■□□□ 1.3
RFC4P35249 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
RFC4P35249 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RFC4P35249 AC104109.2-201ENST00000602919 1418 ntBASIC23.16■■□□□ 1.3
RFC4P35249 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC23.16■■□□□ 1.3
RFC4P35249 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RFC4P35249 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms