Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.5■□□□□ 0.71
BDNFP23560 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.5■□□□□ 0.71
BDNFP23560 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.5■□□□□ 0.71
BDNFP23560 AC093458.2-201ENST00000623150 629 ntBASIC19.5■□□□□ 0.71
BDNFP23560 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
BDNFP23560 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
BDNFP23560 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
BDNFP23560 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.5■□□□□ 0.71
BDNFP23560 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BDNFP23560 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.49■□□□□ 0.71
BDNFP23560 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BDNFP23560 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
BDNFP23560 AL162741.1-201ENST00000565563 1558 ntBASIC19.49■□□□□ 0.71
BDNFP23560 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
BDNFP23560 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.49■□□□□ 0.71
BDNFP23560 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BDNFP23560 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19.49■□□□□ 0.71
BDNFP23560 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BDNFP23560 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BDNFP23560 MIR662-201ENST00000384847 95 ntBASIC19.49■□□□□ 0.71
BDNFP23560 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.49■□□□□ 0.71
BDNFP23560 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.49■□□□□ 0.71
BDNFP23560 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
BDNFP23560 AC009065.1-201ENST00000564055 1225 ntBASIC19.49■□□□□ 0.71
BDNFP23560 AC087289.5-201ENST00000586076 3175 ntBASIC19.49■□□□□ 0.71
BDNFP23560 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
BDNFP23560 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.49■□□□□ 0.71
BDNFP23560 AP000974.1-201ENST00000623909 2387 ntBASIC19.49■□□□□ 0.71
BDNFP23560 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
BDNFP23560 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.48■□□□□ 0.71
BDNFP23560 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
BDNFP23560 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BDNFP23560 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.48■□□□□ 0.71
BDNFP23560 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BDNFP23560 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BDNFP23560 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BDNFP23560 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.48■□□□□ 0.71
BDNFP23560 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.48■□□□□ 0.71
BDNFP23560 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BDNFP23560 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BDNFP23560 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.48■□□□□ 0.71
BDNFP23560 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.48■□□□□ 0.71
BDNFP23560 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
BDNFP23560 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
BDNFP23560 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
BDNFP23560 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BDNFP23560 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BDNFP23560 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
BDNFP23560 AC112777.1-201ENST00000540175 1423 ntBASIC19.48■□□□□ 0.71
BDNFP23560 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BDNFP23560 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
BDNFP23560 MYLKP1-201ENST00000509077 1580 ntBASIC19.48■□□□□ 0.71
BDNFP23560 ANO7L1-203ENST00000602586 1720 ntBASIC19.48■□□□□ 0.71
BDNFP23560 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
BDNFP23560 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
BDNFP23560 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
BDNFP23560 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
BDNFP23560 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BDNFP23560 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BDNFP23560 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BDNFP23560 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BDNFP23560 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.47■□□□□ 0.71
BDNFP23560 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
BDNFP23560 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.47■□□□□ 0.71
BDNFP23560 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
BDNFP23560 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.47■□□□□ 0.71
BDNFP23560 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.47■□□□□ 0.71
BDNFP23560 AC011498.5-201ENST00000592027 486 ntBASIC19.47■□□□□ 0.71
BDNFP23560 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
BDNFP23560 AC069148.1-201ENST00000608741 768 ntBASIC19.47■□□□□ 0.71
BDNFP23560 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
BDNFP23560 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
BDNFP23560 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
BDNFP23560 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.46■□□□□ 0.71
BDNFP23560 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
BDNFP23560 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BDNFP23560 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
BDNFP23560 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
BDNFP23560 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BDNFP23560 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BDNFP23560 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.46■□□□□ 0.71
BDNFP23560 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.46■□□□□ 0.71
BDNFP23560 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
BDNFP23560 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.46■□□□□ 0.71
BDNFP23560 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.46■□□□□ 0.71
BDNFP23560 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.46■□□□□ 0.71
BDNFP23560 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BDNFP23560 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
BDNFP23560 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
BDNFP23560 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BDNFP23560 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BDNFP23560 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
BDNFP23560 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BDNFP23560 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
BDNFP23560 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.45■□□□□ 0.7
BDNFP23560 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.45■□□□□ 0.7
BDNFP23560 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
BDNFP23560 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.45■□□□□ 0.7
BDNFP23560 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
BDNFP23560 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms