Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
RPAP3Q9H6T3 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.32■■□□□ 1
RPAP3Q9H6T3 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.32■■□□□ 1
RPAP3Q9H6T3 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC21.32■■□□□ 1
RPAP3Q9H6T3 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC21.32■■□□□ 1
RPAP3Q9H6T3 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP3Q9H6T3 DFFB-203ENST00000341385 572 ntTSL 5 BASIC21.32■■□□□ 1
RPAP3Q9H6T3 AP000593.1-201ENST00000393668 712 ntBASIC21.32■■□□□ 1
RPAP3Q9H6T3 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.32■■□□□ 1
RPAP3Q9H6T3 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP3Q9H6T3 BET1L-206ENST00000486280 665 ntTSL 3 BASIC21.32■■□□□ 1
RPAP3Q9H6T3 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.32■■□□□ 1
RPAP3Q9H6T3 TPM1-218ENST00000559281 851 ntTSL 5 BASIC21.32■■□□□ 1
RPAP3Q9H6T3 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP3Q9H6T3 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC21.32■■□□□ 1
RPAP3Q9H6T3 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC21.32■■□□□ 1
RPAP3Q9H6T3 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.32■■□□□ 1
RPAP3Q9H6T3 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
RPAP3Q9H6T3 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC21.32■■□□□ 1
RPAP3Q9H6T3 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.32■■□□□ 1
RPAP3Q9H6T3 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP3Q9H6T3 AL049812.1-201ENST00000432563 2267 ntBASIC21.32■■□□□ 1
RPAP3Q9H6T3 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP3Q9H6T3 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.32■■□□□ 1
RPAP3Q9H6T3 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.32■■□□□ 1
RPAP3Q9H6T3 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.32■■□□□ 1
RPAP3Q9H6T3 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.32■■□□□ 1
RPAP3Q9H6T3 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
RPAP3Q9H6T3 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
RPAP3Q9H6T3 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 NSUN5P1-202ENST00000421140 1535 ntBASIC21.31■■□□□ 1
RPAP3Q9H6T3 NSUN5P2-203ENST00000457352 1529 ntBASIC21.31■■□□□ 1
RPAP3Q9H6T3 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.31■■□□□ 1
RPAP3Q9H6T3 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
RPAP3Q9H6T3 AP000347.1-202ENST00000435868 847 ntBASIC21.31■■□□□ 1
RPAP3Q9H6T3 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 AL160237.2-201ENST00000556165 472 ntBASIC21.31■■□□□ 1
RPAP3Q9H6T3 BMF-207ENST00000559701 630 ntTSL 3 BASIC21.31■■□□□ 1
RPAP3Q9H6T3 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.31■■□□□ 1
RPAP3Q9H6T3 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
RPAP3Q9H6T3 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
RPAP3Q9H6T3 AC004263.2-201ENST00000617183 678 ntBASIC21.31■■□□□ 1
RPAP3Q9H6T3 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
RPAP3Q9H6T3 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RPAP3Q9H6T3 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.31■■□□□ 1
RPAP3Q9H6T3 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.3■■□□□ 1
RPAP3Q9H6T3 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.3■■□□□ 1
RPAP3Q9H6T3 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
RPAP3Q9H6T3 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC21.3■■□□□ 1
RPAP3Q9H6T3 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RPAP3Q9H6T3 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RPAP3Q9H6T3 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RPAP3Q9H6T3 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC21.3■■□□□ 1
RPAP3Q9H6T3 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
RPAP3Q9H6T3 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC21.3■■□□□ 1
RPAP3Q9H6T3 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
RPAP3Q9H6T3 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
RPAP3Q9H6T3 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC21.3■■□□□ 1
RPAP3Q9H6T3 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.3■■□□□ 1
RPAP3Q9H6T3 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC21.3■■□□□ 1
RPAP3Q9H6T3 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.3■■□□□ 1
RPAP3Q9H6T3 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC21.3■■□□□ 1
RPAP3Q9H6T3 VENTXP7-201ENST00000475503 772 ntBASIC21.3■■□□□ 1
RPAP3Q9H6T3 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
RPAP3Q9H6T3 AL353801.3-201ENST00000609898 542 ntBASIC21.3■■□□□ 1
RPAP3Q9H6T3 AC083906.6-201ENST00000641366 219 ntBASIC21.3■■□□□ 1
RPAP3Q9H6T3 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RPAP3Q9H6T3 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21.3■■□□□ 1
RPAP3Q9H6T3 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.3■■□□□ 1
RPAP3Q9H6T3 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RPAP3Q9H6T3 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.3■■□□□ 1
RPAP3Q9H6T3 AIRN-201ENST00000601203 4374 ntBASIC21.29■■□□□ 1
RPAP3Q9H6T3 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
RPAP3Q9H6T3 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.29■■□□□ 1
RPAP3Q9H6T3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.29■■□□□ 1
RPAP3Q9H6T3 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
RPAP3Q9H6T3 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RPAP3Q9H6T3 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
RPAP3Q9H6T3 KRT16P4-201ENST00000453883 522 ntBASIC21.29■■□□□ 1
RPAP3Q9H6T3 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
RPAP3Q9H6T3 ABR-204ENST00000543210 1049 ntTSL 2 BASIC21.29■■□□□ 1
RPAP3Q9H6T3 FICD-205ENST00000552758 603 ntTSL 2 BASIC21.29■■□□□ 1
RPAP3Q9H6T3 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC21.29■■□□□ 1
RPAP3Q9H6T3 ABR-217ENST00000572441 563 ntTSL 4 BASIC21.29■■□□□ 1
RPAP3Q9H6T3 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.29■■□□□ 1
RPAP3Q9H6T3 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms