Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 FAM207BP-201ENST00000447172 505 ntBASIC13.92□□□□□ -0.18
LINC00477Q96M19 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 AC130371.2-201ENST00000619443 611 ntBASIC13.92□□□□□ -0.18
LINC00477Q96M19 CR392000.1-201ENST00000624770 1228 ntBASIC13.92□□□□□ -0.18
LINC00477Q96M19 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00477Q96M19 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 RCC2P3-201ENST00000418112 1537 ntBASIC13.91□□□□□ -0.18
LINC00477Q96M19 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 AC006058.3-201ENST00000606217 1069 ntBASIC13.91□□□□□ -0.18
LINC00477Q96M19 AC073195.1-201ENST00000607241 877 ntBASIC13.91□□□□□ -0.18
LINC00477Q96M19 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 AC073648.6-201ENST00000641589 218 ntBASIC13.91□□□□□ -0.18
LINC00477Q96M19 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
LINC00477Q96M19 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00477Q96M19 AL499627.1-201ENST00000569373 2188 ntBASIC13.9□□□□□ -0.18
LINC00477Q96M19 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC13.9□□□□□ -0.18
LINC00477Q96M19 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC13.9□□□□□ -0.18
LINC00477Q96M19 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC13.9□□□□□ -0.18
LINC00477Q96M19 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC13.9□□□□□ -0.18
LINC00477Q96M19 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 AC018470.1-201ENST00000624790 3129 ntBASIC13.9□□□□□ -0.18
LINC00477Q96M19 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 SNCG-201ENST00000348795 684 ntTSL 2 BASIC13.9□□□□□ -0.18
LINC00477Q96M19 FDX2-207ENST00000494368 584 ntTSL 4 BASIC13.9□□□□□ -0.18
LINC00477Q96M19 RARRES2P10-201ENST00000564312 460 ntBASIC13.9□□□□□ -0.18
LINC00477Q96M19 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC13.9□□□□□ -0.18
LINC00477Q96M19 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC13.9□□□□□ -0.18
LINC00477Q96M19 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms