Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 PPIH-202ENST00000372549 327 ntTSL 3 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 AL023284.2-201ENST00000405850 579 ntBASIC5.72□□□□□ -1.49
SYNE1Q8NF91 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 SLC25A6P4-201ENST00000586535 553 ntBASIC5.72□□□□□ -1.49
SYNE1Q8NF91 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 KRT16P6-202ENST00000425692 1426 ntBASIC5.72□□□□□ -1.49
SYNE1Q8NF91 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 AC007613.1-201ENST00000572811 2597 ntBASIC5.72□□□□□ -1.49
SYNE1Q8NF91 USP39-204ENST00000409766 2033 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 AC005332.3-201ENST00000589904 676 ntBASIC5.72□□□□□ -1.49
SYNE1Q8NF91 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 AC092119.3-201ENST00000612618 583 ntBASIC5.72□□□□□ -1.49
SYNE1Q8NF91 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 ANKRD18DP-204ENST00000455355 1975 ntBASIC5.72□□□□□ -1.49
SYNE1Q8NF91 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 BCL10-202ENST00000620248 774 ntTSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 SDHD-206ENST00000528182 754 ntTSL 3 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SYNE1Q8NF91 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms