Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF111Q6ZNA4 AL162741.1-201ENST00000565563 1558 ntBASIC18.03■□□□□ 0.48
RNF111Q6ZNA4 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
RNF111Q6ZNA4 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.03■□□□□ 0.48
RNF111Q6ZNA4 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF111Q6ZNA4 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.03■□□□□ 0.48
RNF111Q6ZNA4 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.03■□□□□ 0.48
RNF111Q6ZNA4 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.03■□□□□ 0.48
RNF111Q6ZNA4 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF111Q6ZNA4 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 AC104417.2-201ENST00000562989 1793 ntBASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 KRT16P1-201ENST00000399124 1418 ntBASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 CR392000.1-201ENST00000624770 1228 ntBASIC18.02■□□□□ 0.48
RNF111Q6ZNA4 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.47
RNF111Q6ZNA4 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.02■□□□□ 0.47
RNF111Q6ZNA4 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RNF111Q6ZNA4 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
RNF111Q6ZNA4 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
RNF111Q6ZNA4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RNF111Q6ZNA4 AL645608.8-201ENST00000606034 2086 ntBASIC18.02■□□□□ 0.47
RNF111Q6ZNA4 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RNF111Q6ZNA4 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RNF111Q6ZNA4 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 CD177P1-201ENST00000606252 935 ntBASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 AC113410.3-201ENST00000623366 203 ntBASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 AC131212.4-201ENST00000623606 975 ntBASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
RNF111Q6ZNA4 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
RNF111Q6ZNA4 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF111Q6ZNA4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
RNF111Q6ZNA4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
RNF111Q6ZNA4 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18■□□□□ 0.47
RNF111Q6ZNA4 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF111Q6ZNA4 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
RNF111Q6ZNA4 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF111Q6ZNA4 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
RNF111Q6ZNA4 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF111Q6ZNA4 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF111Q6ZNA4 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
RNF111Q6ZNA4 AC084018.2-201ENST00000613093 2607 ntBASIC18■□□□□ 0.47
RNF111Q6ZNA4 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RNF111Q6ZNA4 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
RNF111Q6ZNA4 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18■□□□□ 0.47
RNF111Q6ZNA4 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
RNF111Q6ZNA4 FAM197Y1-201ENST00000421178 764 ntBASIC18■□□□□ 0.47
RNF111Q6ZNA4 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18■□□□□ 0.47
RNF111Q6ZNA4 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18■□□□□ 0.47
RNF111Q6ZNA4 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms