Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHROOM1Q2M3G4 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHROOM1Q2M3G4 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHROOM1Q2M3G4 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
SHROOM1Q2M3G4 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHROOM1Q2M3G4 AL353692.3-201ENST00000407031 1396 ntBASIC21.61■■□□□ 1.05
SHROOM1Q2M3G4 AC005082.1-201ENST00000413042 2259 ntBASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 AC004870.1-201ENST00000315132 882 ntBASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 IGHV3-47-201ENST00000425060 335 ntBASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 AC090616.6-201ENST00000582640 721 ntBASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 AC004263.2-201ENST00000617183 678 ntBASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 AC083906.6-201ENST00000641366 219 ntBASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 KRT8P10-201ENST00000450021 1447 ntBASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHROOM1Q2M3G4 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 KRT18P41-201ENST00000518924 1277 ntBASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 AC099336.1-202ENST00000602961 463 ntBASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHROOM1Q2M3G4 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 KRT17P6-201ENST00000453795 1220 ntBASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 AC104819.1-201ENST00000504587 486 ntBASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 AC091304.2-201ENST00000564639 760 ntBASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
SHROOM1Q2M3G4 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SHROOM1Q2M3G4 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SHROOM1Q2M3G4 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.58■■□□□ 1.04
SHROOM1Q2M3G4 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SHROOM1Q2M3G4 PPOX-214ENST00000535223 664 ntTSL 3 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms