Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RNF4P78317 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RNF4P78317 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RNF4P78317 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RNF4P78317 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RNF4P78317 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
RNF4P78317 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
RNF4P78317 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RNF4P78317 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RNF4P78317 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
RNF4P78317 ANO7L1-203ENST00000602586 1720 ntBASIC17.16■□□□□ 0.34
RNF4P78317 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RNF4P78317 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF4P78317 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF4P78317 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.15■□□□□ 0.34
RNF4P78317 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RNF4P78317 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
RNF4P78317 AC112777.1-201ENST00000540175 1423 ntBASIC17.15■□□□□ 0.34
RNF4P78317 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
RNF4P78317 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.15■□□□□ 0.34
RNF4P78317 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF4P78317 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
RNF4P78317 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.15■□□□□ 0.34
RNF4P78317 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.15■□□□□ 0.34
RNF4P78317 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF4P78317 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF4P78317 AL031133.1-201ENST00000406807 723 ntBASIC17.15■□□□□ 0.34
RNF4P78317 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF4P78317 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.15■□□□□ 0.34
RNF4P78317 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
RNF4P78317 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.15■□□□□ 0.34
RNF4P78317 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.15■□□□□ 0.34
RNF4P78317 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RNF4P78317 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.15■□□□□ 0.34
RNF4P78317 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.15■□□□□ 0.34
RNF4P78317 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.15■□□□□ 0.34
RNF4P78317 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.15■□□□□ 0.34
RNF4P78317 CROCCP3-202ENST00000420820 1947 ntBASIC17.15■□□□□ 0.34
RNF4P78317 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RNF4P78317 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF4P78317 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RNF4P78317 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
RNF4P78317 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
RNF4P78317 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
RNF4P78317 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF4P78317 AC098818.2-201ENST00000564925 2320 ntBASIC17.14■□□□□ 0.33
RNF4P78317 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RNF4P78317 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.33
RNF4P78317 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF4P78317 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.14■□□□□ 0.33
RNF4P78317 AL671277.2-201ENST00000458060 996 ntBASIC17.14■□□□□ 0.33
RNF4P78317 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF4P78317 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
RNF4P78317 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.14■□□□□ 0.33
RNF4P78317 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
RNF4P78317 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RNF4P78317 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF4P78317 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF4P78317 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
RNF4P78317 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.14■□□□□ 0.33
RNF4P78317 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF4P78317 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RNF4P78317 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF4P78317 AL031598.1-201ENST00000561511 1773 ntBASIC17.14■□□□□ 0.33
RNF4P78317 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RNF4P78317 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
RNF4P78317 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF4P78317 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
RNF4P78317 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
RNF4P78317 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
RNF4P78317 AL499627.1-201ENST00000569373 2188 ntBASIC17.13■□□□□ 0.33
RNF4P78317 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.13■□□□□ 0.33
RNF4P78317 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF4P78317 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.13■□□□□ 0.33
RNF4P78317 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
RNF4P78317 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RNF4P78317 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.13■□□□□ 0.33
RNF4P78317 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RNF4P78317 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.13■□□□□ 0.33
RNF4P78317 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF4P78317 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF4P78317 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RNF4P78317 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF4P78317 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
RNF4P78317 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.13■□□□□ 0.33
RNF4P78317 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.13■□□□□ 0.33
RNF4P78317 HYMAI.1-201ENST00000620949 238 ntBASIC17.13■□□□□ 0.33
RNF4P78317 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.13■□□□□ 0.33
RNF4P78317 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
RNF4P78317 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
RNF4P78317 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.13■□□□□ 0.33
RNF4P78317 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RNF4P78317 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
RNF4P78317 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF4P78317 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RNF4P78317 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.13■□□□□ 0.33
RNF4P78317 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RNF4P78317 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms