Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.32■□□□□ 0.52
LIMK1P53667 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMK1P53667 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMK1P53667 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMK1P53667 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
LIMK1P53667 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMK1P53667 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
LIMK1P53667 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMK1P53667 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
LIMK1P53667 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMK1P53667 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMK1P53667 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LIMK1P53667 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMK1P53667 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMK1P53667 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMK1P53667 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMK1P53667 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
LIMK1P53667 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMK1P53667 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMK1P53667 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMK1P53667 MCCD1P1-208ENST00000445732 328 ntBASIC18.31■□□□□ 0.52
LIMK1P53667 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LIMK1P53667 VENTXP7-201ENST00000475503 772 ntBASIC18.31■□□□□ 0.52
LIMK1P53667 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.31■□□□□ 0.52
LIMK1P53667 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LIMK1P53667 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.31■□□□□ 0.52
LIMK1P53667 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMK1P53667 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.31■□□□□ 0.52
LIMK1P53667 AL355385.1-201ENST00000606123 409 ntBASIC18.31■□□□□ 0.52
LIMK1P53667 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
LIMK1P53667 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMK1P53667 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMK1P53667 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMK1P53667 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMK1P53667 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.31■□□□□ 0.52
LIMK1P53667 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIMK1P53667 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.3■□□□□ 0.52
LIMK1P53667 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMK1P53667 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
LIMK1P53667 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMK1P53667 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMK1P53667 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMK1P53667 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC18.3■□□□□ 0.52
LIMK1P53667 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMK1P53667 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.3■□□□□ 0.52
LIMK1P53667 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.3■□□□□ 0.52
LIMK1P53667 AP003733.1-201ENST00000491725 852 ntBASIC18.3■□□□□ 0.52
LIMK1P53667 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMK1P53667 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.3■□□□□ 0.52
LIMK1P53667 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
LIMK1P53667 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMK1P53667 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMK1P53667 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.3■□□□□ 0.52
LIMK1P53667 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMK1P53667 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
LIMK1P53667 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMK1P53667 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIMK1P53667 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.3■□□□□ 0.52
LIMK1P53667 AC005332.7-201ENST00000614046 2005 ntBASIC18.3■□□□□ 0.52
LIMK1P53667 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
LIMK1P53667 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMK1P53667 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMK1P53667 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.29■□□□□ 0.52
LIMK1P53667 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.29■□□□□ 0.52
LIMK1P53667 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
LIMK1P53667 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMK1P53667 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIMK1P53667 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMK1P53667 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMK1P53667 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
LIMK1P53667 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIMK1P53667 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
LIMK1P53667 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.29■□□□□ 0.52
LIMK1P53667 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.29■□□□□ 0.52
LIMK1P53667 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.29■□□□□ 0.52
LIMK1P53667 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.29■□□□□ 0.52
LIMK1P53667 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.29■□□□□ 0.52
LIMK1P53667 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
LIMK1P53667 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
LIMK1P53667 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMK1P53667 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMK1P53667 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMK1P53667 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
LIMK1P53667 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMK1P53667 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMK1P53667 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIMK1P53667 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.28■□□□□ 0.52
LIMK1P53667 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMK1P53667 AC022898.2-201ENST00000616822 1312 ntBASIC18.28■□□□□ 0.52
LIMK1P53667 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIMK1P53667 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMK1P53667 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMK1P53667 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMK1P53667 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LIMK1P53667 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMK1P53667 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.28■□□□□ 0.52
LIMK1P53667 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.28■□□□□ 0.52
LIMK1P53667 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.28■□□□□ 0.52
LIMK1P53667 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.28■□□□□ 0.52
LIMK1P53667 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms