Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CXCL12P48061 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CXCL12P48061 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CXCL12P48061 AC112907.3-201ENST00000577781 2400 ntBASIC18.41■□□□□ 0.54
CXCL12P48061 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.41■□□□□ 0.54
CXCL12P48061 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CXCL12P48061 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.41■□□□□ 0.54
CXCL12P48061 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.41■□□□□ 0.54
CXCL12P48061 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CXCL12P48061 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.41■□□□□ 0.54
CXCL12P48061 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CXCL12P48061 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CXCL12P48061 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CXCL12P48061 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CXCL12P48061 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.41■□□□□ 0.54
CXCL12P48061 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.41■□□□□ 0.54
CXCL12P48061 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.41■□□□□ 0.54
CXCL12P48061 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.41■□□□□ 0.54
CXCL12P48061 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CXCL12P48061 AC008687.5-201ENST00000593746 558 ntBASIC18.41■□□□□ 0.54
CXCL12P48061 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CXCL12P48061 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CXCL12P48061 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.41■□□□□ 0.54
CXCL12P48061 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CXCL12P48061 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CXCL12P48061 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CXCL12P48061 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
CXCL12P48061 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CXCL12P48061 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CXCL12P48061 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CXCL12P48061 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CXCL12P48061 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CXCL12P48061 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CXCL12P48061 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.4■□□□□ 0.54
CXCL12P48061 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CXCL12P48061 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CXCL12P48061 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CXCL12P48061 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CXCL12P48061 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CXCL12P48061 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.4■□□□□ 0.54
CXCL12P48061 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CXCL12P48061 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.4■□□□□ 0.54
CXCL12P48061 AC027601.4-201ENST00000611259 610 ntBASIC18.4■□□□□ 0.54
CXCL12P48061 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.4■□□□□ 0.54
CXCL12P48061 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.4■□□□□ 0.54
CXCL12P48061 FP475955.4-201ENST00000623131 1990 ntBASIC18.4■□□□□ 0.54
CXCL12P48061 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CXCL12P48061 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CXCL12P48061 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CXCL12P48061 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CXCL12P48061 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CXCL12P48061 AL137060.1-201ENST00000618151 2648 ntBASIC18.39■□□□□ 0.54
CXCL12P48061 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.39■□□□□ 0.53
CXCL12P48061 LINC01521-201ENST00000504184 1943 ntBASIC18.39■□□□□ 0.53
CXCL12P48061 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.39■□□□□ 0.53
CXCL12P48061 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.39■□□□□ 0.53
CXCL12P48061 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.39■□□□□ 0.53
CXCL12P48061 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.39■□□□□ 0.53
CXCL12P48061 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
CXCL12P48061 PGAM5P1-201ENST00000518923 814 ntBASIC18.39■□□□□ 0.53
CXCL12P48061 AC145285.3-201ENST00000564603 959 ntBASIC18.39■□□□□ 0.53
CXCL12P48061 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.39■□□□□ 0.53
CXCL12P48061 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.39■□□□□ 0.53
CXCL12P48061 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
CXCL12P48061 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.39■□□□□ 0.53
CXCL12P48061 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 AC112777.1-201ENST00000540175 1423 ntBASIC18.39■□□□□ 0.53
CXCL12P48061 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CXCL12P48061 AL163051.1-201ENST00000569214 1512 ntBASIC18.39■□□□□ 0.53
CXCL12P48061 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CXCL12P48061 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CXCL12P48061 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CXCL12P48061 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CXCL12P48061 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CXCL12P48061 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CXCL12P48061 AL357033.4-201ENST00000617703 1807 ntBASIC18.38■□□□□ 0.53
CXCL12P48061 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CXCL12P48061 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.38■□□□□ 0.53
CXCL12P48061 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.38■□□□□ 0.53
CXCL12P48061 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.38■□□□□ 0.53
CXCL12P48061 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.38■□□□□ 0.53
CXCL12P48061 AC113404.2-201ENST00000507884 177 ntBASIC18.38■□□□□ 0.53
CXCL12P48061 AC009533.2-201ENST00000543664 586 ntBASIC18.38■□□□□ 0.53
CXCL12P48061 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.38■□□□□ 0.53
CXCL12P48061 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms