Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AC018845.2-201ENST00000568326 409 ntBASIC24.23■■□□□ 1.47
RXRBP28702 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC24.23■■□□□ 1.47
RXRBP28702 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
RXRBP28702 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC24.23■■□□□ 1.47
RXRBP28702 GPR89P-201ENST00000407924 1495 ntBASIC24.23■■□□□ 1.47
RXRBP28702 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RXRBP28702 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
RXRBP28702 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC24.23■■□□□ 1.47
RXRBP28702 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
RXRBP28702 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
RXRBP28702 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
RXRBP28702 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC24.23■■□□□ 1.47
RXRBP28702 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
RXRBP28702 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
RXRBP28702 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
RXRBP28702 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC24.22■■□□□ 1.47
RXRBP28702 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
RXRBP28702 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
RXRBP28702 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC24.22■■□□□ 1.47
RXRBP28702 CRYGEP-201ENST00000412192 528 ntBASIC24.22■■□□□ 1.47
RXRBP28702 PMS2P4-201ENST00000412466 1052 ntBASIC24.22■■□□□ 1.47
RXRBP28702 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC24.22■■□□□ 1.47
RXRBP28702 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC24.22■■□□□ 1.47
RXRBP28702 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
RXRBP28702 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC24.22■■□□□ 1.47
RXRBP28702 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC24.22■■□□□ 1.47
RXRBP28702 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
RXRBP28702 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
RXRBP28702 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RXRBP28702 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC24.21■■□□□ 1.47
RXRBP28702 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RXRBP28702 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC24.21■■□□□ 1.47
RXRBP28702 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
RXRBP28702 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RXRBP28702 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
RXRBP28702 AC073621.1-201ENST00000392730 636 ntBASIC24.21■■□□□ 1.47
RXRBP28702 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
RXRBP28702 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC24.21■■□□□ 1.47
RXRBP28702 POLD4-211ENST00000539074 714 ntTSL 3 BASIC24.21■■□□□ 1.47
RXRBP28702 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC24.21■■□□□ 1.47
RXRBP28702 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC24.21■■□□□ 1.47
RXRBP28702 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
RXRBP28702 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.47
RXRBP28702 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC24.2■■□□□ 1.47
RXRBP28702 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
RXRBP28702 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
RXRBP28702 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
RXRBP28702 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC24.2■■□□□ 1.46
RXRBP28702 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC24.2■■□□□ 1.46
RXRBP28702 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
RXRBP28702 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC24.2■■□□□ 1.46
RXRBP28702 MAL2-202ENST00000531508 892 ntTSL 3 BASIC24.2■■□□□ 1.46
RXRBP28702 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
RXRBP28702 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
RXRBP28702 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
RXRBP28702 MED29-202ENST00000594368 1471 ntTSL 2 BASIC24.19■■□□□ 1.46
RXRBP28702 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC24.19■■□□□ 1.46
RXRBP28702 GOLGA6L17P-202ENST00000614358 1398 ntBASIC24.19■■□□□ 1.46
RXRBP28702 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RXRBP28702 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RXRBP28702 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RXRBP28702 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RXRBP28702 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC24.19■■□□□ 1.46
RXRBP28702 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC24.19■■□□□ 1.46
RXRBP28702 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC24.19■■□□□ 1.46
RXRBP28702 PON3-205ENST00000451904 1053 ntTSL 3 BASIC24.19■■□□□ 1.46
RXRBP28702 SIGLEC30P-201ENST00000455569 941 ntBASIC24.19■■□□□ 1.46
RXRBP28702 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RXRBP28702 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC24.19■■□□□ 1.46
RXRBP28702 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC24.19■■□□□ 1.46
RXRBP28702 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC24.19■■□□□ 1.46
RXRBP28702 AC006557.2-201ENST00000592985 1240 ntBASIC24.19■■□□□ 1.46
RXRBP28702 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC24.19■■□□□ 1.46
RXRBP28702 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RXRBP28702 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC24.19■■□□□ 1.46
RXRBP28702 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC24.19■■□□□ 1.46
RXRBP28702 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RXRBP28702 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
RXRBP28702 AC125634.1-201ENST00000438758 1403 ntBASIC24.18■■□□□ 1.46
RXRBP28702 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
RXRBP28702 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC24.18■■□□□ 1.46
RXRBP28702 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
RXRBP28702 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
RXRBP28702 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
RXRBP28702 OR8S1-201ENST00000310194 1080 ntBASIC24.18■■□□□ 1.46
RXRBP28702 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC24.18■■□□□ 1.46
RXRBP28702 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC24.18■■□□□ 1.46
RXRBP28702 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
RXRBP28702 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC24.18■■□□□ 1.46
RXRBP28702 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC24.18■■□□□ 1.46
RXRBP28702 AQP6-203ENST00000551733 849 ntTSL 3 BASIC24.18■■□□□ 1.46
RXRBP28702 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC24.18■■□□□ 1.46
RXRBP28702 MIR6752-201ENST00000618442 71 ntBASIC24.18■■□□□ 1.46
RXRBP28702 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
RXRBP28702 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
RXRBP28702 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC24.17■■□□□ 1.46
RXRBP28702 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RXRBP28702 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
RXRBP28702 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC24.17■■□□□ 1.46
RXRBP28702 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms