Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC19.04■□□□□ 0.64
COL9A1P20849 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.04■□□□□ 0.64
COL9A1P20849 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.04■□□□□ 0.64
COL9A1P20849 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.04■□□□□ 0.64
COL9A1P20849 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.04■□□□□ 0.64
COL9A1P20849 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL9A1P20849 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC19.04■□□□□ 0.64
COL9A1P20849 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL9A1P20849 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.04■□□□□ 0.64
COL9A1P20849 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.04■□□□□ 0.64
COL9A1P20849 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL9A1P20849 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL9A1P20849 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL9A1P20849 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL9A1P20849 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL9A1P20849 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.03■□□□□ 0.64
COL9A1P20849 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL9A1P20849 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.03■□□□□ 0.64
COL9A1P20849 MCCD1P1-208ENST00000445732 328 ntBASIC19.03■□□□□ 0.64
COL9A1P20849 MINOS1P3-201ENST00000457048 203 ntBASIC19.03■□□□□ 0.64
COL9A1P20849 VENTXP7-201ENST00000475503 772 ntBASIC19.03■□□□□ 0.64
COL9A1P20849 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.03■□□□□ 0.64
COL9A1P20849 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.03■□□□□ 0.64
COL9A1P20849 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
COL9A1P20849 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL9A1P20849 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL9A1P20849 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.03■□□□□ 0.64
COL9A1P20849 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.03■□□□□ 0.64
COL9A1P20849 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL9A1P20849 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL9A1P20849 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
COL9A1P20849 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.03■□□□□ 0.64
COL9A1P20849 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.03■□□□□ 0.64
COL9A1P20849 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
COL9A1P20849 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL9A1P20849 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL9A1P20849 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
COL9A1P20849 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL9A1P20849 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.02■□□□□ 0.64
COL9A1P20849 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
COL9A1P20849 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL9A1P20849 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL9A1P20849 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
COL9A1P20849 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.02■□□□□ 0.64
COL9A1P20849 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
COL9A1P20849 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
COL9A1P20849 RNA5SP415-201ENST00000517246 115 ntBASIC19.02■□□□□ 0.64
COL9A1P20849 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.02■□□□□ 0.64
COL9A1P20849 MIR3180-5-201ENST00000583743 153 ntBASIC19.02■□□□□ 0.64
COL9A1P20849 MIR6752-201ENST00000618442 71 ntBASIC19.02■□□□□ 0.64
COL9A1P20849 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL9A1P20849 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.02■□□□□ 0.64
COL9A1P20849 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL9A1P20849 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.02■□□□□ 0.64
COL9A1P20849 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL9A1P20849 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL9A1P20849 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL9A1P20849 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL9A1P20849 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL9A1P20849 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL9A1P20849 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
COL9A1P20849 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL9A1P20849 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.02■□□□□ 0.63
COL9A1P20849 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
COL9A1P20849 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
COL9A1P20849 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 EDF1-203ENST00000371649 790 ntTSL 2 BASIC19.01■□□□□ 0.63
COL9A1P20849 POM121L3P-201ENST00000419331 1163 ntBASIC19.01■□□□□ 0.63
COL9A1P20849 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC19.01■□□□□ 0.63
COL9A1P20849 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 AC092910.1-201ENST00000482027 1129 ntBASIC19.01■□□□□ 0.63
COL9A1P20849 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.01■□□□□ 0.63
COL9A1P20849 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.01■□□□□ 0.63
COL9A1P20849 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC19.01■□□□□ 0.63
COL9A1P20849 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.01■□□□□ 0.63
COL9A1P20849 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.01■□□□□ 0.63
COL9A1P20849 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
COL9A1P20849 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.01■□□□□ 0.63
COL9A1P20849 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.01■□□□□ 0.63
COL9A1P20849 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
COL9A1P20849 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.01■□□□□ 0.63
COL9A1P20849 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.01■□□□□ 0.63
COL9A1P20849 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.01■□□□□ 0.63
COL9A1P20849 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.01■□□□□ 0.63
COL9A1P20849 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL9A1P20849 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.01■□□□□ 0.63
COL9A1P20849 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.01■□□□□ 0.63
COL9A1P20849 KRT8P3-201ENST00000519669 1449 ntBASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms