Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC1P18827 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SDC1P18827 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.68■□□□□ 0.42
SDC1P18827 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC1P18827 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC1P18827 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC1P18827 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.68■□□□□ 0.42
SDC1P18827 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SDC1P18827 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.68■□□□□ 0.42
SDC1P18827 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SDC1P18827 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SDC1P18827 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SDC1P18827 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SDC1P18827 CA15P1-201ENST00000481698 905 ntBASIC17.68■□□□□ 0.42
SDC1P18827 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.68■□□□□ 0.42
SDC1P18827 AP001412.1-201ENST00000608405 714 ntBASIC17.68■□□□□ 0.42
SDC1P18827 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.68■□□□□ 0.42
SDC1P18827 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SDC1P18827 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SDC1P18827 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.67■□□□□ 0.42
SDC1P18827 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.67■□□□□ 0.42
SDC1P18827 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.67■□□□□ 0.42
SDC1P18827 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.67■□□□□ 0.42
SDC1P18827 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.67■□□□□ 0.42
SDC1P18827 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.67■□□□□ 0.42
SDC1P18827 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.67■□□□□ 0.42
SDC1P18827 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.67■□□□□ 0.42
SDC1P18827 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SDC1P18827 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.67■□□□□ 0.42
SDC1P18827 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.67■□□□□ 0.42
SDC1P18827 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.67■□□□□ 0.42
SDC1P18827 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SDC1P18827 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SDC1P18827 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.66■□□□□ 0.42
SDC1P18827 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC1P18827 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC1P18827 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC1P18827 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SDC1P18827 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SDC1P18827 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
SDC1P18827 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC1P18827 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
SDC1P18827 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC1P18827 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.66■□□□□ 0.42
SDC1P18827 AP000593.1-201ENST00000393668 712 ntBASIC17.66■□□□□ 0.42
SDC1P18827 CRYGFP-201ENST00000418459 633 ntBASIC17.66■□□□□ 0.42
SDC1P18827 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SDC1P18827 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.66■□□□□ 0.42
SDC1P18827 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.66■□□□□ 0.42
SDC1P18827 MIR4674-201ENST00000582457 87 ntBASIC17.66■□□□□ 0.42
SDC1P18827 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.66■□□□□ 0.42
SDC1P18827 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.66■□□□□ 0.42
SDC1P18827 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.66■□□□□ 0.42
SDC1P18827 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC1P18827 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SDC1P18827 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SDC1P18827 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.66■□□□□ 0.42
SDC1P18827 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC1P18827 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.66■□□□□ 0.42
SDC1P18827 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.66■□□□□ 0.42
SDC1P18827 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
SDC1P18827 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC1P18827 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SDC1P18827 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SDC1P18827 AC034236.2-201ENST00000606662 1610 ntBASIC17.65■□□□□ 0.42
SDC1P18827 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SDC1P18827 KRT8P50-201ENST00000562022 1438 ntBASIC17.65■□□□□ 0.42
SDC1P18827 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC1P18827 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC1P18827 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SDC1P18827 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.65■□□□□ 0.42
SDC1P18827 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC1P18827 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SDC1P18827 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
SDC1P18827 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SDC1P18827 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SDC1P18827 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.65■□□□□ 0.42
SDC1P18827 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SDC1P18827 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SDC1P18827 AL355355.2-201ENST00000442321 338 ntBASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms