Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VCANP13611 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCANP13611 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VCANP13611 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.13■□□□□ 0.65
VCANP13611 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCANP13611 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCANP13611 TP73-AS1-210ENST00000637775 1455 ntBASIC19.13■□□□□ 0.65
VCANP13611 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VCANP13611 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCANP13611 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCANP13611 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
VCANP13611 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VCANP13611 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC19.13■□□□□ 0.65
VCANP13611 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.13■□□□□ 0.65
VCANP13611 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VCANP13611 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.13■□□□□ 0.65
VCANP13611 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VCANP13611 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCANP13611 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
VCANP13611 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
VCANP13611 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
VCANP13611 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
VCANP13611 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VCANP13611 AC008735.5-201ENST00000623544 497 ntBASIC19.13■□□□□ 0.65
VCANP13611 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VCANP13611 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VCANP13611 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCANP13611 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VCANP13611 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VCANP13611 MIR661-201ENST00000384842 89 ntBASIC19.12■□□□□ 0.65
VCANP13611 MCCD1P1-208ENST00000445732 328 ntBASIC19.12■□□□□ 0.65
VCANP13611 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC19.12■□□□□ 0.65
VCANP13611 AP001271.2-201ENST00000624018 1556 ntBASIC19.12■□□□□ 0.65
VCANP13611 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VCANP13611 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCANP13611 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCANP13611 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VCANP13611 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.12■□□□□ 0.65
VCANP13611 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCANP13611 UGT1A2P-201ENST00000454886 866 ntBASIC19.12■□□□□ 0.65
VCANP13611 AC010240.3-201ENST00000607688 395 ntBASIC19.12■□□□□ 0.65
VCANP13611 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
VCANP13611 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCANP13611 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VCANP13611 SDHAP1-207ENST00000440850 2000 ntBASIC19.12■□□□□ 0.65
VCANP13611 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
VCANP13611 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCANP13611 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCANP13611 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCANP13611 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.11■□□□□ 0.65
VCANP13611 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
VCANP13611 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCANP13611 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.11■□□□□ 0.65
VCANP13611 KRT18P27-201ENST00000427733 1299 ntBASIC19.11■□□□□ 0.65
VCANP13611 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.11■□□□□ 0.65
VCANP13611 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC19.11■□□□□ 0.65
VCANP13611 AP003733.1-201ENST00000491725 852 ntBASIC19.11■□□□□ 0.65
VCANP13611 MIR6799-201ENST00000620297 69 ntBASIC19.11■□□□□ 0.65
VCANP13611 C20orf181-201ENST00000623918 480 ntBASIC19.11■□□□□ 0.65
VCANP13611 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCANP13611 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCANP13611 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCANP13611 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCANP13611 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.11■□□□□ 0.65
VCANP13611 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCANP13611 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.11■□□□□ 0.65
VCANP13611 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.11■□□□□ 0.65
VCANP13611 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.11■□□□□ 0.65
VCANP13611 PARP8-206ENST00000503665 572 ntTSL 4 BASIC19.11■□□□□ 0.65
VCANP13611 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.11■□□□□ 0.65
VCANP13611 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCANP13611 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.11■□□□□ 0.65
VCANP13611 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCANP13611 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
VCANP13611 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
VCANP13611 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCANP13611 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
VCANP13611 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCANP13611 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.11■□□□□ 0.65
VCANP13611 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VCANP13611 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.1■□□□□ 0.65
VCANP13611 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.1■□□□□ 0.65
VCANP13611 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VCANP13611 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.1■□□□□ 0.65
VCANP13611 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.1■□□□□ 0.65
VCANP13611 AC092902.6-201ENST00000641783 218 ntBASIC19.1■□□□□ 0.65
VCANP13611 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
VCANP13611 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCANP13611 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.1■□□□□ 0.65
VCANP13611 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.1■□□□□ 0.65
VCANP13611 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.1■□□□□ 0.65
VCANP13611 AC084346.2-201ENST00000607097 949 ntBASIC19.1■□□□□ 0.65
VCANP13611 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCANP13611 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
VCANP13611 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCANP13611 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VCANP13611 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCANP13611 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VCANP13611 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCANP13611 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms