Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RTN3O95197 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.53■□□□□ 0.72
RTN3O95197 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
RTN3O95197 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RTN3O95197 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RTN3O95197 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.53■□□□□ 0.72
RTN3O95197 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RTN3O95197 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.53■□□□□ 0.72
RTN3O95197 AL049812.1-201ENST00000432563 2267 ntBASIC19.53■□□□□ 0.72
RTN3O95197 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.53■□□□□ 0.72
RTN3O95197 Z98044.1-201ENST00000632503 1764 ntBASIC19.53■□□□□ 0.72
RTN3O95197 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RTN3O95197 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RTN3O95197 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
RTN3O95197 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RTN3O95197 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.53■□□□□ 0.72
RTN3O95197 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.53■□□□□ 0.72
RTN3O95197 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.53■□□□□ 0.72
RTN3O95197 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.53■□□□□ 0.72
RTN3O95197 AL136038.3-201ENST00000561909 1096 ntBASIC19.53■□□□□ 0.72
RTN3O95197 AC010240.3-201ENST00000607688 395 ntBASIC19.53■□□□□ 0.72
RTN3O95197 AC083849.1-201ENST00000615227 514 ntBASIC19.53■□□□□ 0.72
RTN3O95197 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.53■□□□□ 0.72
RTN3O95197 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
RTN3O95197 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
RTN3O95197 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RTN3O95197 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.53■□□□□ 0.72
RTN3O95197 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RTN3O95197 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RTN3O95197 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.53■□□□□ 0.72
RTN3O95197 AL357033.4-201ENST00000617703 1807 ntBASIC19.53■□□□□ 0.72
RTN3O95197 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
RTN3O95197 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RTN3O95197 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RTN3O95197 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RTN3O95197 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RTN3O95197 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
RTN3O95197 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
RTN3O95197 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
RTN3O95197 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RTN3O95197 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
RTN3O95197 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RTN3O95197 MTMR9LP-203ENST00000426597 1545 ntBASIC19.52■□□□□ 0.72
RTN3O95197 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.52■□□□□ 0.72
RTN3O95197 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RTN3O95197 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RTN3O95197 HBZP1-201ENST00000354915 429 ntBASIC19.52■□□□□ 0.72
RTN3O95197 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RTN3O95197 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RTN3O95197 MIR3180-4-201ENST00000582223 153 ntBASIC19.52■□□□□ 0.72
RTN3O95197 AL157888.1-201ENST00000631930 593 ntBASIC19.52■□□□□ 0.72
RTN3O95197 AP000550.4-202ENST00000639755 178 ntBASIC19.52■□□□□ 0.72
RTN3O95197 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.52■□□□□ 0.72
RTN3O95197 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
RTN3O95197 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.52■□□□□ 0.72
RTN3O95197 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RTN3O95197 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RTN3O95197 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.52■□□□□ 0.71
RTN3O95197 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.52■□□□□ 0.71
RTN3O95197 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
RTN3O95197 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
RTN3O95197 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.52■□□□□ 0.71
RTN3O95197 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.71
RTN3O95197 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
RTN3O95197 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
RTN3O95197 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
RTN3O95197 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
RTN3O95197 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.51■□□□□ 0.71
RTN3O95197 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
RTN3O95197 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 PCED1CP-201ENST00000419887 785 ntBASIC19.51■□□□□ 0.71
RTN3O95197 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
RTN3O95197 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
RTN3O95197 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
RTN3O95197 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RTN3O95197 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
RTN3O95197 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.51■□□□□ 0.71
RTN3O95197 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.51■□□□□ 0.71
RTN3O95197 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.5■□□□□ 0.71
RTN3O95197 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
RTN3O95197 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 AC005332.8-201ENST00000622750 2735 ntBASIC19.5■□□□□ 0.71
RTN3O95197 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RTN3O95197 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms