Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.83■□□□□ 0.44
PCDHGA1Q9Y5H4 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.83■□□□□ 0.44
PCDHGA1Q9Y5H4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHGA1Q9Y5H4 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHGA1Q9Y5H4 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PCDHGA1Q9Y5H4 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 KRT8P32-201ENST00000512863 1461 ntBASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 AC099778.1-201ENST00000568593 1911 ntBASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 AL353692.3-201ENST00000407031 1396 ntBASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 MINOS1P3-201ENST00000457048 203 ntBASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 AC011840.4-201ENST00000578471 627 ntBASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.82■□□□□ 0.44
PCDHGA1Q9Y5H4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHGA1Q9Y5H4 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 TCF3P1-201ENST00000423021 1937 ntBASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 Z82202.1-201ENST00000623446 1880 ntBASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 KRT18P67-201ENST00000432816 1264 ntBASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 FAM197Y8-203ENST00000450145 560 ntBASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 AC093909.1-201ENST00000504731 1122 ntBASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 KRT18P58-201ENST00000527480 1120 ntBASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 AP005901.3-202ENST00000581653 237 ntBASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 TP73-AS1-207ENST00000624167 988 ntBASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHGA1Q9Y5H4 AC006333.2-201ENST00000607957 2099 ntBASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHGA1Q9Y5H4 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms