Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC39Q9UFE4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC39Q9UFE4 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CCDC39Q9UFE4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC39Q9UFE4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC39Q9UFE4 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC39Q9UFE4 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC39Q9UFE4 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 AC008764.6-201ENST00000595909 2069 ntBASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 RPS2P4-201ENST00000476944 856 ntBASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 Z85996.1-201ENST00000494644 937 ntBASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC39Q9UFE4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 PRORSD1P-201ENST00000295112 541 ntBASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 AC004980.1-204ENST00000429707 299 ntBASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 TSPY23P-201ENST00000440136 739 ntBASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 AC142381.4-202ENST00000563973 229 ntBASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC39Q9UFE4 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 KRT16P1-201ENST00000399124 1418 ntBASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 AF186192.3-201ENST00000583427 947 ntBASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC39Q9UFE4 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms