Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC16.29■□□□□ 0.2
LIME1Q9H400 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
LIME1Q9H400 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC16.29■□□□□ 0.2
LIME1Q9H400 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.29■□□□□ 0.2
LIME1Q9H400 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
LIME1Q9H400 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC16.29■□□□□ 0.2
LIME1Q9H400 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
LIME1Q9H400 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
LIME1Q9H400 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
LIME1Q9H400 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.29■□□□□ 0.2
LIME1Q9H400 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.29■□□□□ 0.2
LIME1Q9H400 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.29■□□□□ 0.2
LIME1Q9H400 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
LIME1Q9H400 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.29■□□□□ 0.2
LIME1Q9H400 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
LIME1Q9H400 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.29■□□□□ 0.2
LIME1Q9H400 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.29■□□□□ 0.2
LIME1Q9H400 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.29■□□□□ 0.2
LIME1Q9H400 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC16.29■□□□□ 0.2
LIME1Q9H400 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIME1Q9H400 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC16.29■□□□□ 0.2
LIME1Q9H400 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC16.28■□□□□ 0.2
LIME1Q9H400 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.28■□□□□ 0.2
LIME1Q9H400 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
LIME1Q9H400 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.28■□□□□ 0.2
LIME1Q9H400 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC16.28■□□□□ 0.2
LIME1Q9H400 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 AC104581.1-202ENST00000635932 2618 ntBASIC16.28■□□□□ 0.2
LIME1Q9H400 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LIME1Q9H400 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LIME1Q9H400 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LIME1Q9H400 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LIME1Q9H400 AP002383.4-201ENST00000442518 975 ntBASIC16.28■□□□□ 0.2
LIME1Q9H400 KRT17P6-201ENST00000453795 1220 ntBASIC16.28■□□□□ 0.2
LIME1Q9H400 RASA4DP-201ENST00000460726 1199 ntBASIC16.28■□□□□ 0.2
LIME1Q9H400 AC009078.2-202ENST00000463353 338 ntBASIC16.28■□□□□ 0.2
LIME1Q9H400 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.28■□□□□ 0.2
LIME1Q9H400 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC16.28■□□□□ 0.2
LIME1Q9H400 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC16.28■□□□□ 0.2
LIME1Q9H400 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.28■□□□□ 0.2
LIME1Q9H400 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.28■□□□□ 0.2
LIME1Q9H400 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.28■□□□□ 0.2
LIME1Q9H400 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LIME1Q9H400 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIME1Q9H400 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LIME1Q9H400 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIME1Q9H400 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIME1Q9H400 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIME1Q9H400 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
LIME1Q9H400 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIME1Q9H400 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIME1Q9H400 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIME1Q9H400 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIME1Q9H400 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.27■□□□□ 0.2
LIME1Q9H400 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIME1Q9H400 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIME1Q9H400 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIME1Q9H400 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIME1Q9H400 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LIME1Q9H400 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
LIME1Q9H400 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
LIME1Q9H400 AC011498.5-201ENST00000592027 486 ntBASIC16.27■□□□□ 0.2
LIME1Q9H400 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.27■□□□□ 0.2
LIME1Q9H400 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.27■□□□□ 0.2
LIME1Q9H400 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIME1Q9H400 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIME1Q9H400 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
LIME1Q9H400 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
LIME1Q9H400 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
LIME1Q9H400 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.27■□□□□ 0.19
LIME1Q9H400 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
LIME1Q9H400 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
LIME1Q9H400 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
LIME1Q9H400 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
LIME1Q9H400 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms