Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 AL357033.4-201ENST00000617703 1807 ntBASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC28BQ9BUN5 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC28BQ9BUN5 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC28BQ9BUN5 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC28BQ9BUN5 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC28BQ9BUN5 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC28BQ9BUN5 AC008556.1-201ENST00000610908 2040 ntBASIC18.08■□□□□ 0.49
CCDC28BQ9BUN5 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.49
CCDC28BQ9BUN5 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC28BQ9BUN5 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC28BQ9BUN5 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC28BQ9BUN5 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC28BQ9BUN5 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC28BQ9BUN5 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC28BQ9BUN5 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
CCDC28BQ9BUN5 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 SLC29A4P1-201ENST00000398760 971 ntBASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 GUSBP6-202ENST00000438529 1198 ntBASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 PRKY-204ENST00000533551 1019 ntBASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC28BQ9BUN5 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 AC084018.2-201ENST00000613093 2607 ntBASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 NBPF21P-201ENST00000425093 1451 ntBASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CCDC28BQ9BUN5 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 Z85996.1-201ENST00000494644 937 ntBASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC28BQ9BUN5 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms