Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 KRT18P23-201ENST00000435622 1283 ntBASIC14.37□□□□□ -0.11
CCDC140Q96MF4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 AC009947.2-201ENST00000444014 672 ntBASIC14.36□□□□□ -0.11
CCDC140Q96MF4 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 DUT-205ENST00000558813 769 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 GPX4-207ENST00000589115 812 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 EFTUD1P1-204ENST00000560401 1798 ntBASIC14.36□□□□□ -0.11
CCDC140Q96MF4 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 CYP51A1P1-201ENST00000492267 1507 ntBASIC14.36□□□□□ -0.11
CCDC140Q96MF4 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CCDC140Q96MF4 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 KRT8P7-201ENST00000533003 1432 ntBASIC14.35□□□□□ -0.11
CCDC140Q96MF4 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 NT5C-210ENST00000582160 860 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 NAT14-202ENST00000587400 416 ntTSL 5 BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 AC133561.5-201ENST00000635547 218 ntBASIC14.35□□□□□ -0.11
CCDC140Q96MF4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 ADK-206ENST00000541550 2222 ntTSL 2 BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CCDC140Q96MF4 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms