Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VMP1Q96GC9 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VMP1Q96GC9 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.8■□□□□ 0.44
VMP1Q96GC9 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.8■□□□□ 0.44
VMP1Q96GC9 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VMP1Q96GC9 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VMP1Q96GC9 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
VMP1Q96GC9 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.79■□□□□ 0.44
VMP1Q96GC9 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.79■□□□□ 0.44
VMP1Q96GC9 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
VMP1Q96GC9 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
VMP1Q96GC9 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.79■□□□□ 0.44
VMP1Q96GC9 CKBP1-201ENST00000565489 1086 ntBASIC17.79■□□□□ 0.44
VMP1Q96GC9 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 AC010947.1-201ENST00000623454 693 ntBASIC17.79■□□□□ 0.44
VMP1Q96GC9 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 CYP2D8P-201ENST00000433633 1490 ntBASIC17.79■□□□□ 0.44
VMP1Q96GC9 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
VMP1Q96GC9 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.79■□□□□ 0.44
VMP1Q96GC9 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.79■□□□□ 0.44
VMP1Q96GC9 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.79■□□□□ 0.44
VMP1Q96GC9 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VMP1Q96GC9 LINC01568-207ENST00000641790 1380 ntBASIC17.79■□□□□ 0.44
VMP1Q96GC9 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VMP1Q96GC9 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VMP1Q96GC9 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VMP1Q96GC9 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VMP1Q96GC9 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VMP1Q96GC9 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.78■□□□□ 0.44
VMP1Q96GC9 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.78■□□□□ 0.44
VMP1Q96GC9 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VMP1Q96GC9 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VMP1Q96GC9 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VMP1Q96GC9 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.78■□□□□ 0.44
VMP1Q96GC9 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.78■□□□□ 0.44
VMP1Q96GC9 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.78■□□□□ 0.44
VMP1Q96GC9 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VMP1Q96GC9 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.78■□□□□ 0.44
VMP1Q96GC9 AC145285.6-201ENST00000604632 637 ntBASIC17.78■□□□□ 0.44
VMP1Q96GC9 AC012306.2-201ENST00000609350 630 ntBASIC17.78■□□□□ 0.44
VMP1Q96GC9 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VMP1Q96GC9 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
VMP1Q96GC9 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VMP1Q96GC9 KRT8P11-201ENST00000409686 1436 ntBASIC17.78■□□□□ 0.44
VMP1Q96GC9 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
VMP1Q96GC9 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.78■□□□□ 0.44
VMP1Q96GC9 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
VMP1Q96GC9 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VMP1Q96GC9 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.78■□□□□ 0.44
VMP1Q96GC9 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.78■□□□□ 0.44
VMP1Q96GC9 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.78■□□□□ 0.44
VMP1Q96GC9 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VMP1Q96GC9 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
VMP1Q96GC9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VMP1Q96GC9 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VMP1Q96GC9 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VMP1Q96GC9 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
VMP1Q96GC9 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VMP1Q96GC9 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VMP1Q96GC9 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VMP1Q96GC9 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VMP1Q96GC9 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.77■□□□□ 0.44
VMP1Q96GC9 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.77■□□□□ 0.44
VMP1Q96GC9 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.77■□□□□ 0.44
VMP1Q96GC9 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.77■□□□□ 0.44
VMP1Q96GC9 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.77■□□□□ 0.44
VMP1Q96GC9 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.77■□□□□ 0.44
VMP1Q96GC9 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.77■□□□□ 0.44
VMP1Q96GC9 EGLN1P1-201ENST00000531623 762 ntBASIC17.77■□□□□ 0.44
VMP1Q96GC9 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
VMP1Q96GC9 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.77■□□□□ 0.44
VMP1Q96GC9 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VMP1Q96GC9 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.77■□□□□ 0.44
VMP1Q96GC9 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.77■□□□□ 0.44
VMP1Q96GC9 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
VMP1Q96GC9 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.77■□□□□ 0.44
VMP1Q96GC9 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VMP1Q96GC9 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.77■□□□□ 0.44
VMP1Q96GC9 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VMP1Q96GC9 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VMP1Q96GC9 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
VMP1Q96GC9 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
VMP1Q96GC9 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VMP1Q96GC9 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
VMP1Q96GC9 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VMP1Q96GC9 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VMP1Q96GC9 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VMP1Q96GC9 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms