Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LMX1AQ8TE12 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 AL357033.4-201ENST00000617703 1807 ntBASIC18.09■□□□□ 0.49
LMX1AQ8TE12 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 TPSP2-201ENST00000561760 610 ntBASIC18.09■□□□□ 0.49
LMX1AQ8TE12 AC111152.3-201ENST00000569699 673 ntBASIC18.09■□□□□ 0.49
LMX1AQ8TE12 IGHV3-41-201ENST00000613121 348 ntBASIC18.09■□□□□ 0.49
LMX1AQ8TE12 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 HEIH-201ENST00000623091 1652 ntBASIC18.09■□□□□ 0.49
LMX1AQ8TE12 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
LMX1AQ8TE12 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LMX1AQ8TE12 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
LMX1AQ8TE12 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.08■□□□□ 0.49
LMX1AQ8TE12 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.49
LMX1AQ8TE12 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LMX1AQ8TE12 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.08■□□□□ 0.49
LMX1AQ8TE12 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.08■□□□□ 0.49
LMX1AQ8TE12 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
LMX1AQ8TE12 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LMX1AQ8TE12 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.08■□□□□ 0.48
LMX1AQ8TE12 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
LMX1AQ8TE12 DRAXINP1-201ENST00000437611 948 ntBASIC18.08■□□□□ 0.48
LMX1AQ8TE12 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.08■□□□□ 0.48
LMX1AQ8TE12 TOB2P1-201ENST00000469761 992 ntBASIC18.08■□□□□ 0.48
LMX1AQ8TE12 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.08■□□□□ 0.48
LMX1AQ8TE12 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.08■□□□□ 0.48
LMX1AQ8TE12 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.08■□□□□ 0.48
LMX1AQ8TE12 AC009065.1-201ENST00000564055 1225 ntBASIC18.08■□□□□ 0.48
LMX1AQ8TE12 RN7SL510P-201ENST00000581311 263 ntBASIC18.08■□□□□ 0.48
LMX1AQ8TE12 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC18.08■□□□□ 0.48
LMX1AQ8TE12 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.08■□□□□ 0.48
LMX1AQ8TE12 AC024563.2-201ENST00000603282 481 ntBASIC18.08■□□□□ 0.48
LMX1AQ8TE12 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.08■□□□□ 0.48
LMX1AQ8TE12 AL390719.2-201ENST00000606993 987 ntBASIC18.08■□□□□ 0.48
LMX1AQ8TE12 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LMX1AQ8TE12 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.08■□□□□ 0.48
LMX1AQ8TE12 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LMX1AQ8TE12 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LMX1AQ8TE12 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 AL845331.1-201ENST00000424978 1190 ntBASIC18.07■□□□□ 0.48
LMX1AQ8TE12 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 NUS1P1-201ENST00000446295 882 ntBASIC18.07■□□□□ 0.48
LMX1AQ8TE12 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 AC090616.6-201ENST00000582640 721 ntBASIC18.07■□□□□ 0.48
LMX1AQ8TE12 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.07■□□□□ 0.48
LMX1AQ8TE12 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LMX1AQ8TE12 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
LMX1AQ8TE12 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms