Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC25.15■■□□□ 1.62
NPHP3Q7Z494 KRT8P50-201ENST00000562022 1438 ntBASIC25.15■■□□□ 1.62
NPHP3Q7Z494 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC25.15■■□□□ 1.62
NPHP3Q7Z494 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
NPHP3Q7Z494 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
NPHP3Q7Z494 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
NPHP3Q7Z494 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
NPHP3Q7Z494 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
NPHP3Q7Z494 YBX2P1-201ENST00000394192 760 ntBASIC25.14■■□□□ 1.62
NPHP3Q7Z494 AC113404.2-201ENST00000507884 177 ntBASIC25.14■■□□□ 1.62
NPHP3Q7Z494 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
NPHP3Q7Z494 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC25.14■■□□□ 1.62
NPHP3Q7Z494 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC25.14■■□□□ 1.62
NPHP3Q7Z494 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC25.14■■□□□ 1.62
NPHP3Q7Z494 AC068587.9-201ENST00000641814 219 ntBASIC25.14■■□□□ 1.62
NPHP3Q7Z494 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
NPHP3Q7Z494 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC25.14■■□□□ 1.62
NPHP3Q7Z494 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC25.14■■□□□ 1.62
NPHP3Q7Z494 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
NPHP3Q7Z494 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC25.14■■□□□ 1.61
NPHP3Q7Z494 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
NPHP3Q7Z494 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
NPHP3Q7Z494 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
NPHP3Q7Z494 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC25.14■■□□□ 1.61
NPHP3Q7Z494 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
NPHP3Q7Z494 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
NPHP3Q7Z494 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 FIS1-203ENST00000442303 631 ntTSL 3 BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 Z83851.2-201ENST00000609564 659 ntBASIC25.13■■□□□ 1.61
NPHP3Q7Z494 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 HLA-J-201ENST00000462773 1622 ntBASIC25.13■■□□□ 1.61
NPHP3Q7Z494 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC25.13■■□□□ 1.61
NPHP3Q7Z494 Z98044.1-201ENST00000632503 1764 ntBASIC25.13■■□□□ 1.61
NPHP3Q7Z494 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 AC004967.1-201ENST00000453589 447 ntBASIC25.12■■□□□ 1.61
NPHP3Q7Z494 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 INTS4P1-201ENST00000438455 1935 ntBASIC25.12■■□□□ 1.61
NPHP3Q7Z494 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 LINC01521-201ENST00000504184 1943 ntBASIC25.12■■□□□ 1.61
NPHP3Q7Z494 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 AL357033.4-201ENST00000617703 1807 ntBASIC25.12■■□□□ 1.61
NPHP3Q7Z494 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 RPS2P1-201ENST00000434010 821 ntBASIC25.12■■□□□ 1.61
NPHP3Q7Z494 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 DNAJB3-201ENST00000446806 729 ntBASIC25.12■■□□□ 1.61
NPHP3Q7Z494 KRT18P3-201ENST00000451602 1288 ntBASIC25.12■■□□□ 1.61
NPHP3Q7Z494 AC009533.2-201ENST00000543664 586 ntBASIC25.12■■□□□ 1.61
NPHP3Q7Z494 SART3-203ENST00000546611 1184 ntBASIC25.12■■□□□ 1.61
NPHP3Q7Z494 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC25.12■■□□□ 1.61
NPHP3Q7Z494 AC083906.6-201ENST00000641366 219 ntBASIC25.12■■□□□ 1.61
NPHP3Q7Z494 AC079781.4-201ENST00000641908 219 ntBASIC25.12■■□□□ 1.61
NPHP3Q7Z494 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 DANCR-204ENST00000444958 709 ntTSL 3 BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 DHDH-204ENST00000523250 634 ntTSL 5 BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 AC040169.1-201ENST00000565382 521 ntBASIC25.11■■□□□ 1.61
NPHP3Q7Z494 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC25.11■■□□□ 1.61
NPHP3Q7Z494 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC25.1■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms