Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL7A1Q02388 AC020907.5-201ENST00000624372 1936 ntBASIC13.26□□□□□ -0.29
COL7A1Q02388 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC13.26□□□□□ -0.29
COL7A1Q02388 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC13.26□□□□□ -0.29
COL7A1Q02388 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
COL7A1Q02388 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC13.26□□□□□ -0.29
COL7A1Q02388 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC13.26□□□□□ -0.29
COL7A1Q02388 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC13.26□□□□□ -0.29
COL7A1Q02388 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC13.26□□□□□ -0.29
COL7A1Q02388 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC13.26□□□□□ -0.29
COL7A1Q02388 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC13.26□□□□□ -0.29
COL7A1Q02388 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC13.26□□□□□ -0.29
COL7A1Q02388 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
COL7A1Q02388 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL7A1Q02388 TP73-202ENST00000354437 2140 ntTSL 5 BASIC13.26□□□□□ -0.29
COL7A1Q02388 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC13.26□□□□□ -0.29
COL7A1Q02388 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
COL7A1Q02388 HLA-J-201ENST00000462773 1622 ntBASIC13.26□□□□□ -0.29
COL7A1Q02388 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL7A1Q02388 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL7A1Q02388 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL7A1Q02388 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC13.26□□□□□ -0.29
COL7A1Q02388 RBSN-204ENST00000449050 903 ntTSL 2 BASIC13.26□□□□□ -0.29
COL7A1Q02388 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC13.26□□□□□ -0.29
COL7A1Q02388 COX5A-204ENST00000567270 579 ntTSL 3 BASIC13.26□□□□□ -0.29
COL7A1Q02388 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC13.26□□□□□ -0.29
COL7A1Q02388 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC13.26□□□□□ -0.29
COL7A1Q02388 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
COL7A1Q02388 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC13.26□□□□□ -0.29
COL7A1Q02388 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
COL7A1Q02388 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC13.25□□□□□ -0.29
COL7A1Q02388 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC13.25□□□□□ -0.29
COL7A1Q02388 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 AC034236.2-201ENST00000606662 1610 ntBASIC13.25□□□□□ -0.29
COL7A1Q02388 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC13.25□□□□□ -0.29
COL7A1Q02388 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 KRT89P-201ENST00000620027 1478 ntBASIC13.25□□□□□ -0.29
COL7A1Q02388 MED16-201ENST00000269814 1199 ntTSL 5 BASIC13.25□□□□□ -0.29
COL7A1Q02388 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC13.25□□□□□ -0.29
COL7A1Q02388 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC13.25□□□□□ -0.29
COL7A1Q02388 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC13.25□□□□□ -0.29
COL7A1Q02388 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC13.25□□□□□ -0.29
COL7A1Q02388 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC13.25□□□□□ -0.29
COL7A1Q02388 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
COL7A1Q02388 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC13.25□□□□□ -0.29
COL7A1Q02388 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC13.25□□□□□ -0.29
COL7A1Q02388 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC13.25□□□□□ -0.29
COL7A1Q02388 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 TEX21P-204ENST00000641479 1693 ntBASIC13.25□□□□□ -0.29
COL7A1Q02388 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
COL7A1Q02388 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 ENSA-205ENST00000361532 792 ntTSL 2 BASIC13.25□□□□□ -0.29
COL7A1Q02388 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC13.25□□□□□ -0.29
COL7A1Q02388 THAP5-204ENST00000438865 868 ntTSL 2 BASIC13.25□□□□□ -0.29
COL7A1Q02388 ALG1L5P-201ENST00000482043 771 ntBASIC13.25□□□□□ -0.29
COL7A1Q02388 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC13.25□□□□□ -0.29
COL7A1Q02388 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC13.25□□□□□ -0.29
COL7A1Q02388 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC13.25□□□□□ -0.29
COL7A1Q02388 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
COL7A1Q02388 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC13.25□□□□□ -0.29
COL7A1Q02388 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC13.25□□□□□ -0.29
COL7A1Q02388 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL7A1Q02388 RCC2P3-201ENST00000418112 1537 ntBASIC13.24□□□□□ -0.29
COL7A1Q02388 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL7A1Q02388 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL7A1Q02388 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL7A1Q02388 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL7A1Q02388 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC13.24□□□□□ -0.29
COL7A1Q02388 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
COL7A1Q02388 AC021087.4-201ENST00000563761 564 ntBASIC13.24□□□□□ -0.29
COL7A1Q02388 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC13.24□□□□□ -0.29
COL7A1Q02388 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC13.24□□□□□ -0.29
COL7A1Q02388 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC13.24□□□□□ -0.29
COL7A1Q02388 KRT18P28-201ENST00000453838 1332 ntBASIC13.24□□□□□ -0.29
COL7A1Q02388 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL7A1Q02388 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
COL7A1Q02388 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL7A1Q02388 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.24□□□□□ -0.29
COL7A1Q02388 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC13.24□□□□□ -0.29
COL7A1Q02388 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC13.24□□□□□ -0.29
COL7A1Q02388 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC13.24□□□□□ -0.29
COL7A1Q02388 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC13.24□□□□□ -0.29
COL7A1Q02388 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL7A1Q02388 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL7A1Q02388 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC13.24□□□□□ -0.29
COL7A1Q02388 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC13.24□□□□□ -0.29
COL7A1Q02388 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms