Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIM2P55344 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIM2P55344 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.63■□□□□ 0.41
LIM2P55344 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LIM2P55344 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.63■□□□□ 0.41
LIM2P55344 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIM2P55344 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.63■□□□□ 0.41
LIM2P55344 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LIM2P55344 AC113347.1-201ENST00000413321 391 ntBASIC17.63■□□□□ 0.41
LIM2P55344 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.63■□□□□ 0.41
LIM2P55344 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
LIM2P55344 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.63■□□□□ 0.41
LIM2P55344 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.63■□□□□ 0.41
LIM2P55344 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIM2P55344 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIM2P55344 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LIM2P55344 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.63■□□□□ 0.41
LIM2P55344 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
LIM2P55344 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIM2P55344 AC135050.7-201ENST00000624508 2218 ntBASIC17.63■□□□□ 0.41
LIM2P55344 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LIM2P55344 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIM2P55344 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.63■□□□□ 0.41
LIM2P55344 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIM2P55344 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.62■□□□□ 0.41
LIM2P55344 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 AC034236.2-201ENST00000606662 1610 ntBASIC17.62■□□□□ 0.41
LIM2P55344 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.62■□□□□ 0.41
LIM2P55344 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
LIM2P55344 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.62■□□□□ 0.41
LIM2P55344 AC010203.1-204ENST00000548782 407 ntBASIC17.62■□□□□ 0.41
LIM2P55344 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.62■□□□□ 0.41
LIM2P55344 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIM2P55344 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.62■□□□□ 0.41
LIM2P55344 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.61■□□□□ 0.41
LIM2P55344 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIM2P55344 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIM2P55344 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LIM2P55344 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIM2P55344 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIM2P55344 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIM2P55344 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.61■□□□□ 0.41
LIM2P55344 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIM2P55344 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIM2P55344 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.61■□□□□ 0.41
LIM2P55344 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIM2P55344 LIN28AP1-201ENST00000429574 405 ntBASIC17.61■□□□□ 0.41
LIM2P55344 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.61■□□□□ 0.41
LIM2P55344 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.61■□□□□ 0.41
LIM2P55344 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LIM2P55344 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.61■□□□□ 0.41
LIM2P55344 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.61■□□□□ 0.41
LIM2P55344 AL138966.2-201ENST00000621997 464 ntBASIC17.61■□□□□ 0.41
LIM2P55344 AL499627.1-201ENST00000569373 2188 ntBASIC17.61■□□□□ 0.41
LIM2P55344 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIM2P55344 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.61■□□□□ 0.41
LIM2P55344 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIM2P55344 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIM2P55344 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIM2P55344 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.61■□□□□ 0.41
LIM2P55344 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.61■□□□□ 0.41
LIM2P55344 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LIM2P55344 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIM2P55344 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
LIM2P55344 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.61■□□□□ 0.41
LIM2P55344 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.61■□□□□ 0.41
LIM2P55344 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIM2P55344 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
LIM2P55344 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.6■□□□□ 0.41
LIM2P55344 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.6■□□□□ 0.41
LIM2P55344 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
LIM2P55344 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
LIM2P55344 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.6■□□□□ 0.41
LIM2P55344 TERF1P1-201ENST00000311003 1181 ntBASIC17.6■□□□□ 0.41
LIM2P55344 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIM2P55344 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms