Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CXCL12P48061 AC116407.3-201ENST00000623905 1129 ntBASIC18.46■□□□□ 0.55
CXCL12P48061 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.46■□□□□ 0.55
CXCL12P48061 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CXCL12P48061 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.46■□□□□ 0.55
CXCL12P48061 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CXCL12P48061 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CXCL12P48061 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CXCL12P48061 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.45■□□□□ 0.54
CXCL12P48061 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CXCL12P48061 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.45■□□□□ 0.54
CXCL12P48061 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.45■□□□□ 0.54
CXCL12P48061 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
CXCL12P48061 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CXCL12P48061 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CXCL12P48061 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CXCL12P48061 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CXCL12P48061 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CXCL12P48061 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.45■□□□□ 0.54
CXCL12P48061 RBM17P3-201ENST00000417687 1192 ntBASIC18.45■□□□□ 0.54
CXCL12P48061 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CXCL12P48061 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CXCL12P48061 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.45■□□□□ 0.54
CXCL12P48061 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.45■□□□□ 0.54
CXCL12P48061 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.45■□□□□ 0.54
CXCL12P48061 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CXCL12P48061 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CXCL12P48061 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CXCL12P48061 IRX1P1-201ENST00000438849 1838 ntBASIC18.44■□□□□ 0.54
CXCL12P48061 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.44■□□□□ 0.54
CXCL12P48061 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.44■□□□□ 0.54
CXCL12P48061 HNRNPDP1-201ENST00000439535 754 ntBASIC18.44■□□□□ 0.54
CXCL12P48061 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.44■□□□□ 0.54
CXCL12P48061 FGFR3P6-201ENST00000457012 610 ntBASIC18.44■□□□□ 0.54
CXCL12P48061 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.44■□□□□ 0.54
CXCL12P48061 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.44■□□□□ 0.54
CXCL12P48061 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 AC068587.9-201ENST00000641814 219 ntBASIC18.44■□□□□ 0.54
CXCL12P48061 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CXCL12P48061 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.44■□□□□ 0.54
CXCL12P48061 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CXCL12P48061 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.43■□□□□ 0.54
CXCL12P48061 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CXCL12P48061 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CXCL12P48061 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CXCL12P48061 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.43■□□□□ 0.54
CXCL12P48061 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CXCL12P48061 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.43■□□□□ 0.54
CXCL12P48061 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.43■□□□□ 0.54
CXCL12P48061 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
CXCL12P48061 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.43■□□□□ 0.54
CXCL12P48061 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.43■□□□□ 0.54
CXCL12P48061 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CXCL12P48061 AL691403.2-201ENST00000618460 490 ntBASIC18.43■□□□□ 0.54
CXCL12P48061 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.43■□□□□ 0.54
CXCL12P48061 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.43■□□□□ 0.54
CXCL12P48061 TP73-AS1-210ENST00000637775 1455 ntBASIC18.43■□□□□ 0.54
CXCL12P48061 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CXCL12P48061 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CXCL12P48061 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.43■□□□□ 0.54
CXCL12P48061 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CXCL12P48061 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CXCL12P48061 Z98044.1-201ENST00000632503 1764 ntBASIC18.42■□□□□ 0.54
CXCL12P48061 KRT8P50-201ENST00000562022 1438 ntBASIC18.42■□□□□ 0.54
CXCL12P48061 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CXCL12P48061 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CXCL12P48061 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CXCL12P48061 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CXCL12P48061 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CXCL12P48061 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CXCL12P48061 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CXCL12P48061 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.42■□□□□ 0.54
CXCL12P48061 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.42■□□□□ 0.54
CXCL12P48061 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.42■□□□□ 0.54
CXCL12P48061 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.42■□□□□ 0.54
CXCL12P48061 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.42■□□□□ 0.54
CXCL12P48061 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.42■□□□□ 0.54
CXCL12P48061 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CXCL12P48061 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CXCL12P48061 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CXCL12P48061 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.42■□□□□ 0.54
CXCL12P48061 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.42■□□□□ 0.54
CXCL12P48061 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.42■□□□□ 0.54
CXCL12P48061 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.42■□□□□ 0.54
CXCL12P48061 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms