Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHMT2P34897 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHMT2P34897 AP000523.1-201ENST00000398242 1049 ntBASIC18.19■□□□□ 0.5
SHMT2P34897 BX664615.1-201ENST00000443558 458 ntBASIC18.19■□□□□ 0.5
SHMT2P34897 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHMT2P34897 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
SHMT2P34897 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.19■□□□□ 0.5
SHMT2P34897 CR769767.2-201ENST00000622735 460 ntBASIC18.19■□□□□ 0.5
SHMT2P34897 AC141257.4-201ENST00000634557 245 ntBASIC18.19■□□□□ 0.5
SHMT2P34897 AC136944.6-201ENST00000634818 245 ntBASIC18.19■□□□□ 0.5
SHMT2P34897 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHMT2P34897 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SHMT2P34897 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHMT2P34897 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.19■□□□□ 0.5
SHMT2P34897 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.19■□□□□ 0.5
SHMT2P34897 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHMT2P34897 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.18■□□□□ 0.5
SHMT2P34897 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SHMT2P34897 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SHMT2P34897 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.18■□□□□ 0.5
SHMT2P34897 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.18■□□□□ 0.5
SHMT2P34897 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.18■□□□□ 0.5
SHMT2P34897 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SHMT2P34897 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SHMT2P34897 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.18■□□□□ 0.5
SHMT2P34897 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
SHMT2P34897 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SHMT2P34897 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SHMT2P34897 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.18■□□□□ 0.5
SHMT2P34897 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.18■□□□□ 0.5
SHMT2P34897 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHMT2P34897 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHMT2P34897 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHMT2P34897 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHMT2P34897 LTB4R2-202ENST00000528054 3092 ntBASIC18.17■□□□□ 0.5
SHMT2P34897 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHMT2P34897 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHMT2P34897 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.17■□□□□ 0.5
SHMT2P34897 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SHMT2P34897 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHMT2P34897 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.17■□□□□ 0.5
SHMT2P34897 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.17■□□□□ 0.5
SHMT2P34897 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHMT2P34897 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.17■□□□□ 0.5
SHMT2P34897 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.17■□□□□ 0.5
SHMT2P34897 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.17■□□□□ 0.5
SHMT2P34897 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.17■□□□□ 0.5
SHMT2P34897 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SHMT2P34897 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.17■□□□□ 0.5
SHMT2P34897 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.17■□□□□ 0.5
SHMT2P34897 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SHMT2P34897 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHMT2P34897 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHMT2P34897 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHMT2P34897 AL390961.4-201ENST00000623958 2535 ntBASIC18.17■□□□□ 0.5
SHMT2P34897 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.17■□□□□ 0.5
SHMT2P34897 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHMT2P34897 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHMT2P34897 AC036111.1-201ENST00000533973 1582 ntBASIC18.17■□□□□ 0.5
SHMT2P34897 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SHMT2P34897 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.16■□□□□ 0.5
SHMT2P34897 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.16■□□□□ 0.5
SHMT2P34897 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.16■□□□□ 0.5
SHMT2P34897 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.16■□□□□ 0.5
SHMT2P34897 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.16■□□□□ 0.5
SHMT2P34897 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.16■□□□□ 0.5
SHMT2P34897 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.16■□□□□ 0.5
SHMT2P34897 NEK4P2-201ENST00000580004 1012 ntBASIC18.16■□□□□ 0.5
SHMT2P34897 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.16■□□□□ 0.5
SHMT2P34897 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.16■□□□□ 0.5
SHMT2P34897 AC068587.9-201ENST00000641814 219 ntBASIC18.16■□□□□ 0.5
SHMT2P34897 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHMT2P34897 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms