Protein–RNA interactions for Protein: P09630

HOXC6, Homeobox protein Hox-C6, humanhuman

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6P09630 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.98■□□□□ 0.95
HOXC6P09630 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.98■□□□□ 0.95
HOXC6P09630 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.98■□□□□ 0.95
HOXC6P09630 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC6P09630 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC6P09630 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC6P09630 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.98■□□□□ 0.95
HOXC6P09630 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC6P09630 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
HOXC6P09630 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.98■□□□□ 0.95
HOXC6P09630 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.98■□□□□ 0.95
HOXC6P09630 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXC6P09630 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.98■□□□□ 0.95
HOXC6P09630 TP73-AS1-207ENST00000624167 988 ntBASIC20.98■□□□□ 0.95
HOXC6P09630 AC117500.6-201ENST00000624871 588 ntBASIC20.98■□□□□ 0.95
HOXC6P09630 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC6P09630 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC6P09630 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
HOXC6P09630 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC6P09630 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC6P09630 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXC6P09630 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
HOXC6P09630 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC6P09630 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC6P09630 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
HOXC6P09630 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.97■□□□□ 0.95
HOXC6P09630 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC6P09630 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC6P09630 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC6P09630 NUS1P2-201ENST00000417358 873 ntBASIC20.97■□□□□ 0.95
HOXC6P09630 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.97■□□□□ 0.95
HOXC6P09630 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.97■□□□□ 0.95
HOXC6P09630 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.97■□□□□ 0.95
HOXC6P09630 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
HOXC6P09630 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.97■□□□□ 0.95
HOXC6P09630 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC6P09630 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.97■□□□□ 0.95
HOXC6P09630 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC6P09630 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC6P09630 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.96■□□□□ 0.95
HOXC6P09630 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.96■□□□□ 0.95
HOXC6P09630 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.96■□□□□ 0.95
HOXC6P09630 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC6P09630 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC6P09630 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC6P09630 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC6P09630 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.96■□□□□ 0.95
HOXC6P09630 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC6P09630 AP000593.1-201ENST00000393668 712 ntBASIC20.96■□□□□ 0.95
HOXC6P09630 PMS2P1-201ENST00000431037 1228 ntBASIC20.96■□□□□ 0.95
HOXC6P09630 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC6P09630 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.96■□□□□ 0.95
HOXC6P09630 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.96■□□□□ 0.95
HOXC6P09630 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.96■□□□□ 0.95
HOXC6P09630 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
HOXC6P09630 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20.96■□□□□ 0.95
HOXC6P09630 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.96■□□□□ 0.95
HOXC6P09630 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC6P09630 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC6P09630 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.96■□□□□ 0.95
HOXC6P09630 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC6P09630 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
HOXC6P09630 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
HOXC6P09630 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.95■□□□□ 0.95
HOXC6P09630 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.95
HOXC6P09630 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC6P09630 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC6P09630 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.95■□□□□ 0.94
HOXC6P09630 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.95■□□□□ 0.94
HOXC6P09630 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC6P09630 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC6P09630 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC6P09630 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC6P09630 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC6P09630 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC6P09630 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC6P09630 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
HOXC6P09630 AP001005.1-201ENST00000571755 1248 ntBASIC20.95■□□□□ 0.94
HOXC6P09630 AC011840.4-201ENST00000578471 627 ntBASIC20.95■□□□□ 0.94
HOXC6P09630 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.95■□□□□ 0.94
HOXC6P09630 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
HOXC6P09630 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
HOXC6P09630 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC6P09630 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
HOXC6P09630 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC6P09630 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC6P09630 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC6P09630 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.95■□□□□ 0.94
HOXC6P09630 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC6P09630 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC6P09630 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC6P09630 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
HOXC6P09630 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
HOXC6P09630 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.94■□□□□ 0.94
HOXC6P09630 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC6P09630 FP475955.4-201ENST00000623131 1990 ntBASIC20.94■□□□□ 0.94
HOXC6P09630 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
HOXC6P09630 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
HOXC6P09630 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.94■□□□□ 0.94
HOXC6P09630 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms