Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 RPL18-209ENST00000550645 463 ntTSL 5 BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 RPL18-214ENST00000552588 559 ntTSL 3 BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 AL591684.3-201ENST00000605187 298 ntBASIC32.16■■■□□ 2.74
CCDC88BA6NC98 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
CCDC88BA6NC98 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC32.15■■■□□ 2.74
CCDC88BA6NC98 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
CCDC88BA6NC98 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
CCDC88BA6NC98 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
CCDC88BA6NC98 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
CCDC88BA6NC98 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC32.15■■■□□ 2.74
CCDC88BA6NC98 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC32.15■■■□□ 2.74
CCDC88BA6NC98 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC32.15■■■□□ 2.74
CCDC88BA6NC98 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC32.15■■■□□ 2.74
CCDC88BA6NC98 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
CCDC88BA6NC98 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC32.15■■■□□ 2.74
CCDC88BA6NC98 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC32.15■■■□□ 2.74
CCDC88BA6NC98 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC32.15■■■□□ 2.74
CCDC88BA6NC98 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC32.15■■■□□ 2.74
CCDC88BA6NC98 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
CCDC88BA6NC98 ME2-218ENST00000640965 2476 ntTSL 5 BASIC32.14■■■□□ 2.74
CCDC88BA6NC98 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC32.14■■■□□ 2.74
CCDC88BA6NC98 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC32.14■■■□□ 2.74
CCDC88BA6NC98 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC32.14■■■□□ 2.74
CCDC88BA6NC98 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
CCDC88BA6NC98 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC32.14■■■□□ 2.74
CCDC88BA6NC98 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.73
CCDC88BA6NC98 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
CCDC88BA6NC98 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
CCDC88BA6NC98 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC32.13■■■□□ 2.73
CCDC88BA6NC98 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
CCDC88BA6NC98 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC32.13■■■□□ 2.73
CCDC88BA6NC98 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC32.13■■■□□ 2.73
CCDC88BA6NC98 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC32.13■■■□□ 2.73
CCDC88BA6NC98 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC32.13■■■□□ 2.73
CCDC88BA6NC98 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC32.13■■■□□ 2.73
CCDC88BA6NC98 PAM16-208ENST00000573553 722 ntTSL 2 BASIC32.13■■■□□ 2.73
CCDC88BA6NC98 AL355877.3-201ENST00000622820 899 ntBASIC32.13■■■□□ 2.73
CCDC88BA6NC98 AC117500.6-201ENST00000624871 588 ntBASIC32.13■■■□□ 2.73
CCDC88BA6NC98 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
CCDC88BA6NC98 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
CCDC88BA6NC98 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC32.13■■■□□ 2.73
CCDC88BA6NC98 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC32.13■■■□□ 2.73
CCDC88BA6NC98 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 MIR149-201ENST00000384879 89 ntBASIC32.12■■■□□ 2.73
CCDC88BA6NC98 HNRNPDP1-201ENST00000439535 754 ntBASIC32.12■■■□□ 2.73
CCDC88BA6NC98 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 AC106730.1-201ENST00000566722 1090 ntBASIC32.12■■■□□ 2.73
CCDC88BA6NC98 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 AP001269.4-201ENST00000609611 512 ntBASIC32.12■■■□□ 2.73
CCDC88BA6NC98 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC32.12■■■□□ 2.73
CCDC88BA6NC98 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 RPP21-221ENST00000428040 594 ntTSL 2 BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC32.11■■■□□ 2.73
CCDC88BA6NC98 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
CCDC88BA6NC98 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC32.1■■■□□ 2.73
CCDC88BA6NC98 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC32.1■■■□□ 2.73
CCDC88BA6NC98 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC32.1■■■□□ 2.73
CCDC88BA6NC98 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
CCDC88BA6NC98 ANKRD20A8P-203ENST00000641373 517 ntBASIC32.1■■■□□ 2.73
CCDC88BA6NC98 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC32.1■■■□□ 2.73
CCDC88BA6NC98 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
CCDC88BA6NC98 AL024508.2-201ENST00000607749 1894 ntBASIC32.1■■■□□ 2.73
CCDC88BA6NC98 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms