Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 AC010240.3-201ENST00000607688 395 ntBASIC18.68■□□□□ 0.58
DKK3Q9UBP4 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
DKK3Q9UBP4 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 AP000593.1-201ENST00000393668 712 ntBASIC18.67■□□□□ 0.58
DKK3Q9UBP4 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
DKK3Q9UBP4 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.66■□□□□ 0.58
DKK3Q9UBP4 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
DKK3Q9UBP4 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 AC083849.1-201ENST00000615227 514 ntBASIC18.65■□□□□ 0.58
DKK3Q9UBP4 AL157888.1-201ENST00000631930 593 ntBASIC18.65■□□□□ 0.58
DKK3Q9UBP4 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
DKK3Q9UBP4 LINC01311-201ENST00000565162 1445 ntBASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms