Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 AC008687.6-201ENST00000596318 630 ntBASIC17.04■□□□□ 0.32
DDX28Q9NUL7 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DDX28Q9NUL7 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 AC011270.2-201ENST00000624293 2550 ntBASIC17.03■□□□□ 0.32
DDX28Q9NUL7 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
DDX28Q9NUL7 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
DDX28Q9NUL7 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.02■□□□□ 0.31
DDX28Q9NUL7 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
DDX28Q9NUL7 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
DDX28Q9NUL7 AC124067.4-201ENST00000519691 2379 ntBASIC17.02■□□□□ 0.31
DDX28Q9NUL7 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.02■□□□□ 0.31
DDX28Q9NUL7 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
DDX28Q9NUL7 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
DDX28Q9NUL7 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
DDX28Q9NUL7 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.02■□□□□ 0.31
DDX28Q9NUL7 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
DDX28Q9NUL7 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
DDX28Q9NUL7 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
DDX28Q9NUL7 ZNF815P-204ENST00000434898 1737 ntBASIC17.01■□□□□ 0.31
DDX28Q9NUL7 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 AL354751.1-201ENST00000412768 1863 ntBASIC17.01■□□□□ 0.31
DDX28Q9NUL7 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 UNC93B4-201ENST00000505679 747 ntBASIC17.01■□□□□ 0.31
DDX28Q9NUL7 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
DDX28Q9NUL7 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms