Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 AC141257.4-201ENST00000634557 245 ntBASIC19.09■□□□□ 0.65
SKA1Q96BD8 AC136944.6-201ENST00000634818 245 ntBASIC19.09■□□□□ 0.65
SKA1Q96BD8 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SKA1Q96BD8 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SKA1Q96BD8 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.09■□□□□ 0.65
SKA1Q96BD8 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SKA1Q96BD8 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SKA1Q96BD8 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SKA1Q96BD8 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SKA1Q96BD8 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
SKA1Q96BD8 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SKA1Q96BD8 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SKA1Q96BD8 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SKA1Q96BD8 NOC2LP1-202ENST00000452600 2235 ntBASIC19.08■□□□□ 0.65
SKA1Q96BD8 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
SKA1Q96BD8 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.08■□□□□ 0.65
SKA1Q96BD8 AC093525.10-201ENST00000625130 1569 ntBASIC19.08■□□□□ 0.65
SKA1Q96BD8 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.08■□□□□ 0.64
SKA1Q96BD8 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
SKA1Q96BD8 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.08■□□□□ 0.64
SKA1Q96BD8 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.08■□□□□ 0.64
SKA1Q96BD8 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SKA1Q96BD8 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.08■□□□□ 0.64
SKA1Q96BD8 YBX1P2-201ENST00000489612 999 ntBASIC19.08■□□□□ 0.64
SKA1Q96BD8 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SKA1Q96BD8 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.08■□□□□ 0.64
SKA1Q96BD8 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.08■□□□□ 0.64
SKA1Q96BD8 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
SKA1Q96BD8 AL023803.3-201ENST00000615559 522 ntBASIC19.08■□□□□ 0.64
SKA1Q96BD8 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.08■□□□□ 0.64
SKA1Q96BD8 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SKA1Q96BD8 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SKA1Q96BD8 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.64
SKA1Q96BD8 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.08■□□□□ 0.64
SKA1Q96BD8 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
SKA1Q96BD8 NOC2LP2-201ENST00000407594 1944 ntBASIC19.08■□□□□ 0.64
SKA1Q96BD8 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
SKA1Q96BD8 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SKA1Q96BD8 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
SKA1Q96BD8 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.07■□□□□ 0.64
SKA1Q96BD8 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
SKA1Q96BD8 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.07■□□□□ 0.64
SKA1Q96BD8 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SKA1Q96BD8 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SKA1Q96BD8 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SKA1Q96BD8 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SKA1Q96BD8 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SKA1Q96BD8 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.07■□□□□ 0.64
SKA1Q96BD8 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.07■□□□□ 0.64
SKA1Q96BD8 HOMER2P1-201ENST00000455653 964 ntBASIC19.07■□□□□ 0.64
SKA1Q96BD8 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SKA1Q96BD8 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.07■□□□□ 0.64
SKA1Q96BD8 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.07■□□□□ 0.64
SKA1Q96BD8 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SKA1Q96BD8 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SKA1Q96BD8 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.07■□□□□ 0.64
SKA1Q96BD8 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SKA1Q96BD8 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SKA1Q96BD8 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SKA1Q96BD8 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.07■□□□□ 0.64
SKA1Q96BD8 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SKA1Q96BD8 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SKA1Q96BD8 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SKA1Q96BD8 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.06■□□□□ 0.64
SKA1Q96BD8 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SKA1Q96BD8 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SKA1Q96BD8 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.06■□□□□ 0.64
SKA1Q96BD8 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SKA1Q96BD8 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SKA1Q96BD8 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SKA1Q96BD8 LTB4R2-202ENST00000528054 3092 ntBASIC19.06■□□□□ 0.64
SKA1Q96BD8 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.06■□□□□ 0.64
SKA1Q96BD8 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SKA1Q96BD8 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.06■□□□□ 0.64
SKA1Q96BD8 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.06■□□□□ 0.64
SKA1Q96BD8 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.06■□□□□ 0.64
SKA1Q96BD8 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SKA1Q96BD8 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.06■□□□□ 0.64
SKA1Q96BD8 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SKA1Q96BD8 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.06■□□□□ 0.64
SKA1Q96BD8 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SKA1Q96BD8 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SKA1Q96BD8 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SKA1Q96BD8 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SKA1Q96BD8 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
SKA1Q96BD8 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.05■□□□□ 0.64
SKA1Q96BD8 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SKA1Q96BD8 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SKA1Q96BD8 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SKA1Q96BD8 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.05■□□□□ 0.64
SKA1Q96BD8 AP000523.1-201ENST00000398242 1049 ntBASIC19.05■□□□□ 0.64
SKA1Q96BD8 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.05■□□□□ 0.64
SKA1Q96BD8 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.05■□□□□ 0.64
SKA1Q96BD8 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.05■□□□□ 0.64
SKA1Q96BD8 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.05■□□□□ 0.64
SKA1Q96BD8 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms