Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP38Q8NB14 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP38Q8NB14 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP38Q8NB14 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP38Q8NB14 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP38Q8NB14 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.75■□□□□ 0.91
USP38Q8NB14 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC20.75■□□□□ 0.91
USP38Q8NB14 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.75■□□□□ 0.91
USP38Q8NB14 EMBP1-201ENST00000458200 901 ntBASIC20.75■□□□□ 0.91
USP38Q8NB14 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.75■□□□□ 0.91
USP38Q8NB14 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.75■□□□□ 0.91
USP38Q8NB14 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP38Q8NB14 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.75■□□□□ 0.91
USP38Q8NB14 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.75■□□□□ 0.91
USP38Q8NB14 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.75■□□□□ 0.91
USP38Q8NB14 IFNL4P1-201ENST00000607083 540 ntBASIC20.75■□□□□ 0.91
USP38Q8NB14 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP38Q8NB14 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP38Q8NB14 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
USP38Q8NB14 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP38Q8NB14 SDHAP1-207ENST00000440850 2000 ntBASIC20.75■□□□□ 0.91
USP38Q8NB14 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.75■□□□□ 0.91
USP38Q8NB14 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
USP38Q8NB14 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP38Q8NB14 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP38Q8NB14 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.74■□□□□ 0.91
USP38Q8NB14 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
USP38Q8NB14 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.74■□□□□ 0.91
USP38Q8NB14 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.74■□□□□ 0.91
USP38Q8NB14 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.74■□□□□ 0.91
USP38Q8NB14 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.74■□□□□ 0.91
USP38Q8NB14 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
USP38Q8NB14 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
USP38Q8NB14 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.74■□□□□ 0.91
USP38Q8NB14 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
USP38Q8NB14 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
USP38Q8NB14 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
USP38Q8NB14 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.74■□□□□ 0.91
USP38Q8NB14 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP38Q8NB14 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.73■□□□□ 0.91
USP38Q8NB14 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.73■□□□□ 0.91
USP38Q8NB14 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
USP38Q8NB14 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP38Q8NB14 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP38Q8NB14 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP38Q8NB14 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
USP38Q8NB14 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
USP38Q8NB14 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.73■□□□□ 0.91
USP38Q8NB14 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
USP38Q8NB14 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP38Q8NB14 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP38Q8NB14 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP38Q8NB14 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
USP38Q8NB14 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP38Q8NB14 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP38Q8NB14 SPDYE13P-201ENST00000445314 798 ntBASIC20.73■□□□□ 0.91
USP38Q8NB14 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.73■□□□□ 0.91
USP38Q8NB14 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
USP38Q8NB14 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.73■□□□□ 0.91
USP38Q8NB14 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP38Q8NB14 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
USP38Q8NB14 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP38Q8NB14 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP38Q8NB14 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP38Q8NB14 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.73■□□□□ 0.91
USP38Q8NB14 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP38Q8NB14 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.72■□□□□ 0.91
USP38Q8NB14 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
USP38Q8NB14 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.72■□□□□ 0.91
USP38Q8NB14 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 SPDYE15P-201ENST00000424157 909 ntBASIC20.72■□□□□ 0.91
USP38Q8NB14 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.72■□□□□ 0.91
USP38Q8NB14 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.72■□□□□ 0.91
USP38Q8NB14 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.72■□□□□ 0.91
USP38Q8NB14 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.72■□□□□ 0.91
USP38Q8NB14 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.72■□□□□ 0.91
USP38Q8NB14 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.72■□□□□ 0.91
USP38Q8NB14 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.72■□□□□ 0.91
USP38Q8NB14 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms