Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
HSPG2P98160 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HSPG2P98160 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
HSPG2P98160 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
HSPG2P98160 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HSPG2P98160 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
HSPG2P98160 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC11.5□□□□□ -0.57
HSPG2P98160 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HSPG2P98160 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC11.5□□□□□ -0.57
HSPG2P98160 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
HSPG2P98160 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC11.5□□□□□ -0.57
HSPG2P98160 PPOX-214ENST00000535223 664 ntTSL 3 BASIC11.5□□□□□ -0.57
HSPG2P98160 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HSPG2P98160 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
HSPG2P98160 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
HSPG2P98160 GOLGA6L17P-202ENST00000614358 1398 ntBASIC11.5□□□□□ -0.57
HSPG2P98160 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
HSPG2P98160 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
HSPG2P98160 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC11.49□□□□□ -0.57
HSPG2P98160 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC11.49□□□□□ -0.57
HSPG2P98160 AC005034.1-201ENST00000426657 489 ntBASIC11.49□□□□□ -0.57
HSPG2P98160 GSAP-205ENST00000430584 600 ntTSL 5 BASIC11.49□□□□□ -0.57
HSPG2P98160 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
HSPG2P98160 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC11.49□□□□□ -0.57
HSPG2P98160 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC11.49□□□□□ -0.57
HSPG2P98160 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC11.49□□□□□ -0.57
HSPG2P98160 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC11.49□□□□□ -0.57
HSPG2P98160 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC11.49□□□□□ -0.57
HSPG2P98160 REEP1-209ENST00000541910 969 ntTSL 2 BASIC11.49□□□□□ -0.57
HSPG2P98160 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
HSPG2P98160 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
HSPG2P98160 Z92544.3-201ENST00000624747 417 ntBASIC11.49□□□□□ -0.57
HSPG2P98160 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC11.49□□□□□ -0.57
HSPG2P98160 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC11.49□□□□□ -0.57
HSPG2P98160 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC11.49□□□□□ -0.57
HSPG2P98160 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 AC112777.1-201ENST00000540175 1423 ntBASIC11.49□□□□□ -0.57
HSPG2P98160 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC11.49□□□□□ -0.57
HSPG2P98160 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 OR7E14P-202ENST00000530490 1290 ntBASIC11.49□□□□□ -0.57
HSPG2P98160 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC11.49□□□□□ -0.57
HSPG2P98160 AC011467.2-201ENST00000598425 242 ntBASIC11.49□□□□□ -0.57
HSPG2P98160 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
HSPG2P98160 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC11.49□□□□□ -0.57
HSPG2P98160 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
HSPG2P98160 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC11.49□□□□□ -0.57
HSPG2P98160 RAB17-203ENST00000409576 466 ntTSL 3 BASIC11.49□□□□□ -0.57
HSPG2P98160 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC11.49□□□□□ -0.57
HSPG2P98160 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC11.49□□□□□ -0.57
HSPG2P98160 AC104390.1-201ENST00000555663 520 ntBASIC11.49□□□□□ -0.57
HSPG2P98160 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC11.49□□□□□ -0.57
HSPG2P98160 COX5A-204ENST00000567270 579 ntTSL 3 BASIC11.49□□□□□ -0.57
HSPG2P98160 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC11.49□□□□□ -0.57
HSPG2P98160 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC11.48□□□□□ -0.57
HSPG2P98160 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC11.48□□□□□ -0.57
HSPG2P98160 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC11.48□□□□□ -0.57
HSPG2P98160 AC107918.4-202ENST00000641623 219 ntBASIC11.48□□□□□ -0.57
HSPG2P98160 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC11.48□□□□□ -0.57
HSPG2P98160 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 GK-202ENST00000378941 458 ntTSL 3 BASIC11.48□□□□□ -0.57
HSPG2P98160 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 AC005225.4-201ENST00000557330 545 ntBASIC11.48□□□□□ -0.57
HSPG2P98160 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC11.48□□□□□ -0.57
HSPG2P98160 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
HSPG2P98160 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC11.48□□□□□ -0.57
HSPG2P98160 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 AC254562.1-201ENST00000417586 456 ntBASIC11.48□□□□□ -0.57
HSPG2P98160 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 RPS29-206ENST00000557111 488 ntTSL 2 BASIC11.48□□□□□ -0.57
HSPG2P98160 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HSPG2P98160 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC11.48□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms