Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPS28P62857 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPS28P62857 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RPS28P62857 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC10.78□□□□□ -0.68
RPS28P62857 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC10.78□□□□□ -0.68
RPS28P62857 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC10.78□□□□□ -0.68
RPS28P62857 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
RPS28P62857 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC10.78□□□□□ -0.68
RPS28P62857 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC10.78□□□□□ -0.68
RPS28P62857 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
RPS28P62857 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 AL365209.1-201ENST00000624418 6473 ntBASIC10.78□□□□□ -0.68
RPS28P62857 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC10.78□□□□□ -0.68
RPS28P62857 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC10.78□□□□□ -0.68
RPS28P62857 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC10.78□□□□□ -0.68
RPS28P62857 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC10.78□□□□□ -0.68
RPS28P62857 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC10.78□□□□□ -0.68
RPS28P62857 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC10.78□□□□□ -0.68
RPS28P62857 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC10.78□□□□□ -0.68
RPS28P62857 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 AC073869.1-201ENST00000415574 2762 ntBASIC10.78□□□□□ -0.68
RPS28P62857 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
RPS28P62857 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC10.78□□□□□ -0.68
RPS28P62857 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC10.78□□□□□ -0.68
RPS28P62857 CICP20-201ENST00000443330 2801 ntBASIC10.78□□□□□ -0.68
RPS28P62857 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
RPS28P62857 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC10.78□□□□□ -0.68
RPS28P62857 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC10.78□□□□□ -0.68
RPS28P62857 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPS28P62857 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC10.78□□□□□ -0.68
RPS28P62857 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC10.77□□□□□ -0.68
RPS28P62857 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.68
RPS28P62857 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.68
RPS28P62857 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC10.77□□□□□ -0.68
RPS28P62857 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC10.77□□□□□ -0.68
RPS28P62857 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC10.77□□□□□ -0.68
RPS28P62857 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
RPS28P62857 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPS28P62857 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
RPS28P62857 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPS28P62857 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPS28P62857 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPS28P62857 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPS28P62857 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC10.77□□□□□ -0.69
RPS28P62857 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC10.77□□□□□ -0.69
RPS28P62857 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPS28P62857 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
RPS28P62857 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC10.77□□□□□ -0.69
RPS28P62857 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPS28P62857 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC10.77□□□□□ -0.69
RPS28P62857 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC10.77□□□□□ -0.69
RPS28P62857 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC10.77□□□□□ -0.69
RPS28P62857 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC10.77□□□□□ -0.69
RPS28P62857 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
RPS28P62857 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC10.77□□□□□ -0.69
RPS28P62857 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPS28P62857 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPS28P62857 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPS28P62857 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC10.77□□□□□ -0.69
RPS28P62857 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC10.77□□□□□ -0.69
RPS28P62857 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC10.77□□□□□ -0.69
RPS28P62857 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC10.77□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms