Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.04■□□□□ 0.48
FOXA1P55317 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
FOXA1P55317 AC008764.6-201ENST00000595909 2069 ntBASIC18.03■□□□□ 0.48
FOXA1P55317 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.03■□□□□ 0.48
FOXA1P55317 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
FOXA1P55317 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.03■□□□□ 0.48
FOXA1P55317 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.03■□□□□ 0.48
FOXA1P55317 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.03■□□□□ 0.48
FOXA1P55317 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.03■□□□□ 0.48
FOXA1P55317 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.03■□□□□ 0.48
FOXA1P55317 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.03■□□□□ 0.48
FOXA1P55317 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
FOXA1P55317 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.03■□□□□ 0.48
FOXA1P55317 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.03■□□□□ 0.48
FOXA1P55317 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.03■□□□□ 0.48
FOXA1P55317 MYC-208ENST00000641036 567 ntBASIC18.03■□□□□ 0.48
FOXA1P55317 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.03■□□□□ 0.48
FOXA1P55317 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.03■□□□□ 0.48
FOXA1P55317 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
FOXA1P55317 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.03■□□□□ 0.48
FOXA1P55317 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
FOXA1P55317 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
FOXA1P55317 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
FOXA1P55317 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA1P55317 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA1P55317 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.02■□□□□ 0.48
FOXA1P55317 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA1P55317 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA1P55317 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA1P55317 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA1P55317 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
FOXA1P55317 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA1P55317 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.02■□□□□ 0.48
FOXA1P55317 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.02■□□□□ 0.48
FOXA1P55317 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
FOXA1P55317 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
FOXA1P55317 FAM197Y1-201ENST00000421178 764 ntBASIC18.02■□□□□ 0.48
FOXA1P55317 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.02■□□□□ 0.48
FOXA1P55317 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.02■□□□□ 0.48
FOXA1P55317 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
FOXA1P55317 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
FOXA1P55317 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
FOXA1P55317 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
FOXA1P55317 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
FOXA1P55317 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
FOXA1P55317 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.02■□□□□ 0.47
FOXA1P55317 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
FOXA1P55317 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
FOXA1P55317 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
FOXA1P55317 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.02■□□□□ 0.47
FOXA1P55317 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
FOXA1P55317 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
FOXA1P55317 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.02■□□□□ 0.47
FOXA1P55317 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA1P55317 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.01■□□□□ 0.47
FOXA1P55317 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA1P55317 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA1P55317 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.01■□□□□ 0.47
FOXA1P55317 MYLKP1-201ENST00000509077 1580 ntBASIC18.01■□□□□ 0.47
FOXA1P55317 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA1P55317 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
FOXA1P55317 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.01■□□□□ 0.47
FOXA1P55317 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA1P55317 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.01■□□□□ 0.47
FOXA1P55317 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA1P55317 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA1P55317 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.01■□□□□ 0.47
FOXA1P55317 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
FOXA1P55317 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms