Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
COL8A1P27658 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.22■□□□□ 0.19
COL8A1P27658 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
COL8A1P27658 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.22■□□□□ 0.19
COL8A1P27658 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.22■□□□□ 0.19
COL8A1P27658 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.22■□□□□ 0.19
COL8A1P27658 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.22■□□□□ 0.19
COL8A1P27658 MED15P5-201ENST00000423150 992 ntBASIC16.22■□□□□ 0.19
COL8A1P27658 AC004967.1-201ENST00000453589 447 ntBASIC16.22■□□□□ 0.19
COL8A1P27658 AC132008.2-207ENST00000454517 770 ntBASIC16.22■□□□□ 0.19
COL8A1P27658 RN7SL606P-201ENST00000472779 293 ntBASIC16.22■□□□□ 0.19
COL8A1P27658 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.22■□□□□ 0.19
COL8A1P27658 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.22■□□□□ 0.19
COL8A1P27658 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.22■□□□□ 0.19
COL8A1P27658 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.22■□□□□ 0.19
COL8A1P27658 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.22■□□□□ 0.19
COL8A1P27658 MIR5100-201ENST00000579544 119 ntBASIC16.22■□□□□ 0.19
COL8A1P27658 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.22■□□□□ 0.19
COL8A1P27658 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.22■□□□□ 0.19
COL8A1P27658 GPR32P1-201ENST00000601788 811 ntBASIC16.22■□□□□ 0.19
COL8A1P27658 AC027601.4-201ENST00000611259 610 ntBASIC16.22■□□□□ 0.19
COL8A1P27658 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 AC083906.6-201ENST00000641366 219 ntBASIC16.22■□□□□ 0.19
COL8A1P27658 AC134684.3-201ENST00000641758 218 ntBASIC16.22■□□□□ 0.19
COL8A1P27658 AC079781.4-201ENST00000641908 219 ntBASIC16.22■□□□□ 0.19
COL8A1P27658 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
COL8A1P27658 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
COL8A1P27658 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL8A1P27658 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL8A1P27658 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL8A1P27658 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
COL8A1P27658 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL8A1P27658 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL8A1P27658 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL8A1P27658 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL8A1P27658 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC16.21■□□□□ 0.19
COL8A1P27658 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
COL8A1P27658 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
COL8A1P27658 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL8A1P27658 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.21■□□□□ 0.19
COL8A1P27658 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.21■□□□□ 0.19
COL8A1P27658 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.21■□□□□ 0.19
COL8A1P27658 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.21■□□□□ 0.19
COL8A1P27658 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL8A1P27658 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.21■□□□□ 0.19
COL8A1P27658 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.21■□□□□ 0.19
COL8A1P27658 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.21■□□□□ 0.19
COL8A1P27658 SART3-203ENST00000546611 1184 ntBASIC16.21■□□□□ 0.19
COL8A1P27658 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.21■□□□□ 0.19
COL8A1P27658 MIR3687-2-201ENST00000577708 61 ntBASIC16.21■□□□□ 0.19
COL8A1P27658 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.21■□□□□ 0.19
COL8A1P27658 MIR3687-1-201ENST00000614492 61 ntBASIC16.21■□□□□ 0.19
COL8A1P27658 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL8A1P27658 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL8A1P27658 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
COL8A1P27658 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL8A1P27658 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC16.21■□□□□ 0.19
COL8A1P27658 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.21■□□□□ 0.19
COL8A1P27658 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
COL8A1P27658 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL8A1P27658 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL8A1P27658 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL8A1P27658 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL8A1P27658 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL8A1P27658 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL8A1P27658 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL8A1P27658 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL8A1P27658 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
COL8A1P27658 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL8A1P27658 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
COL8A1P27658 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL8A1P27658 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.2■□□□□ 0.18
COL8A1P27658 YBX2P1-201ENST00000394192 760 ntBASIC16.2■□□□□ 0.18
COL8A1P27658 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL8A1P27658 AC244107.1-201ENST00000442033 332 ntBASIC16.2■□□□□ 0.18
COL8A1P27658 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC16.2■□□□□ 0.18
COL8A1P27658 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.2■□□□□ 0.18
COL8A1P27658 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
COL8A1P27658 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC16.2■□□□□ 0.18
COL8A1P27658 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL8A1P27658 AL355877.3-201ENST00000622820 899 ntBASIC16.2■□□□□ 0.18
COL8A1P27658 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL8A1P27658 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC16.2■□□□□ 0.18
COL8A1P27658 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC16.2■□□□□ 0.18
COL8A1P27658 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
COL8A1P27658 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms