Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A1P20908 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.85■□□□□ 0.45
COL5A1P20908 AC008608.2-201ENST00000606089 416 ntBASIC17.85■□□□□ 0.45
COL5A1P20908 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.85■□□□□ 0.45
COL5A1P20908 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.85■□□□□ 0.45
COL5A1P20908 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
COL5A1P20908 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.85■□□□□ 0.45
COL5A1P20908 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A1P20908 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A1P20908 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A1P20908 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.85■□□□□ 0.45
COL5A1P20908 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A1P20908 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.84■□□□□ 0.45
COL5A1P20908 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
COL5A1P20908 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A1P20908 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.84■□□□□ 0.45
COL5A1P20908 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.84■□□□□ 0.45
COL5A1P20908 AC005336.2-201ENST00000593183 939 ntBASIC17.84■□□□□ 0.45
COL5A1P20908 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL5A1P20908 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A1P20908 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.84■□□□□ 0.45
COL5A1P20908 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A1P20908 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.84■□□□□ 0.45
COL5A1P20908 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.84■□□□□ 0.45
COL5A1P20908 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A1P20908 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.84■□□□□ 0.45
COL5A1P20908 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A1P20908 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.84■□□□□ 0.45
COL5A1P20908 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.84■□□□□ 0.45
COL5A1P20908 AC113404.2-201ENST00000507884 177 ntBASIC17.84■□□□□ 0.45
COL5A1P20908 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A1P20908 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.84■□□□□ 0.45
COL5A1P20908 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.84■□□□□ 0.45
COL5A1P20908 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.84■□□□□ 0.45
COL5A1P20908 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A1P20908 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL5A1P20908 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL5A1P20908 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
COL5A1P20908 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.83■□□□□ 0.44
COL5A1P20908 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A1P20908 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A1P20908 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A1P20908 KRT18P58-201ENST00000527480 1120 ntBASIC17.83■□□□□ 0.44
COL5A1P20908 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A1P20908 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.83■□□□□ 0.44
COL5A1P20908 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.83■□□□□ 0.44
COL5A1P20908 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
COL5A1P20908 AC068587.9-201ENST00000641814 219 ntBASIC17.83■□□□□ 0.44
COL5A1P20908 AF228730.7-201ENST00000641842 219 ntBASIC17.83■□□□□ 0.44
COL5A1P20908 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
COL5A1P20908 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A1P20908 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
COL5A1P20908 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A1P20908 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A1P20908 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A1P20908 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.82■□□□□ 0.44
COL5A1P20908 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.82■□□□□ 0.44
COL5A1P20908 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 SLC25A1P1-201ENST00000528351 927 ntBASIC17.82■□□□□ 0.44
COL5A1P20908 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.82■□□□□ 0.44
COL5A1P20908 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.82■□□□□ 0.44
COL5A1P20908 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.82■□□□□ 0.44
COL5A1P20908 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC17.82■□□□□ 0.44
COL5A1P20908 FEM1AP3-201ENST00000403722 1741 ntBASIC17.82■□□□□ 0.44
COL5A1P20908 Z98044.1-201ENST00000632503 1764 ntBASIC17.82■□□□□ 0.44
COL5A1P20908 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.82■□□□□ 0.44
COL5A1P20908 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
COL5A1P20908 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.82■□□□□ 0.44
COL5A1P20908 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.82■□□□□ 0.44
COL5A1P20908 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.82■□□□□ 0.44
COL5A1P20908 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.82■□□□□ 0.44
COL5A1P20908 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.82■□□□□ 0.44
COL5A1P20908 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.82■□□□□ 0.44
COL5A1P20908 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A1P20908 AC139530.3-201ENST00000620344 690 ntBASIC17.82■□□□□ 0.44
COL5A1P20908 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
COL5A1P20908 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
COL5A1P20908 FP475955.4-201ENST00000623131 1990 ntBASIC17.81■□□□□ 0.44
COL5A1P20908 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.81■□□□□ 0.44
COL5A1P20908 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
COL5A1P20908 KRT8P50-201ENST00000562022 1438 ntBASIC17.81■□□□□ 0.44
COL5A1P20908 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms