Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 AC112777.1-201ENST00000540175 1423 ntBASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 PPP1R14BP2-201ENST00000426284 444 ntBASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 C1QL1P1-201ENST00000568105 661 ntBASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 AC092437.1-201ENST00000624794 1048 ntBASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 AC134043.2-201ENST00000624206 2238 ntBASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBE2D4Q9Y2X8 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 OR6D1P-202ENST00000641007 5290 ntBASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 KRT8P41-201ENST00000533985 1514 ntBASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 HR-201ENST00000312841 5351 ntTSL 5 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 SLC25A6P5-201ENST00000435663 894 ntBASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 PRKY-204ENST00000533551 1019 ntBASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 KLF2-202ENST00000592003 564 ntTSL 3 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
UBE2D4Q9Y2X8 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 KRT8P32-201ENST00000512863 1461 ntBASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
UBE2D4Q9Y2X8 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms