Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.39■□□□□ 0.53
SRP54P61011 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.39■□□□□ 0.53
SRP54P61011 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.39■□□□□ 0.53
SRP54P61011 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.39■□□□□ 0.53
SRP54P61011 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
SRP54P61011 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SRP54P61011 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SRP54P61011 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SRP54P61011 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SRP54P61011 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SRP54P61011 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SRP54P61011 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SRP54P61011 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SRP54P61011 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SRP54P61011 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SRP54P61011 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.38■□□□□ 0.53
SRP54P61011 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SRP54P61011 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.38■□□□□ 0.53
SRP54P61011 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.38■□□□□ 0.53
SRP54P61011 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
SRP54P61011 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SRP54P61011 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SRP54P61011 MIR564-202ENST00000385049 94 ntBASIC18.38■□□□□ 0.53
SRP54P61011 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
SRP54P61011 KRT18P23-201ENST00000435622 1283 ntBASIC18.38■□□□□ 0.53
SRP54P61011 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.38■□□□□ 0.53
SRP54P61011 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.38■□□□□ 0.53
SRP54P61011 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SRP54P61011 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
SRP54P61011 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.38■□□□□ 0.53
SRP54P61011 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SRP54P61011 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.38■□□□□ 0.53
SRP54P61011 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SRP54P61011 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SRP54P61011 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SRP54P61011 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SRP54P61011 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SRP54P61011 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SRP54P61011 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.38■□□□□ 0.53
SRP54P61011 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SRP54P61011 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SRP54P61011 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
SRP54P61011 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
SRP54P61011 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
SRP54P61011 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.37■□□□□ 0.53
SRP54P61011 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.37■□□□□ 0.53
SRP54P61011 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.37■□□□□ 0.53
SRP54P61011 SPDYE13P-201ENST00000445314 798 ntBASIC18.37■□□□□ 0.53
SRP54P61011 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.37■□□□□ 0.53
SRP54P61011 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.37■□□□□ 0.53
SRP54P61011 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.37■□□□□ 0.53
SRP54P61011 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
SRP54P61011 KRT8P7-201ENST00000533003 1432 ntBASIC18.37■□□□□ 0.53
SRP54P61011 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.37■□□□□ 0.53
SRP54P61011 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SRP54P61011 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.37■□□□□ 0.53
SRP54P61011 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SRP54P61011 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SRP54P61011 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.37■□□□□ 0.53
SRP54P61011 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SRP54P61011 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SRP54P61011 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SRP54P61011 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.36■□□□□ 0.53
SRP54P61011 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.36■□□□□ 0.53
SRP54P61011 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SRP54P61011 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SRP54P61011 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.36■□□□□ 0.53
SRP54P61011 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SRP54P61011 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.36■□□□□ 0.53
SRP54P61011 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.36■□□□□ 0.53
SRP54P61011 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.36■□□□□ 0.53
SRP54P61011 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.36■□□□□ 0.53
SRP54P61011 AC093458.2-201ENST00000623150 629 ntBASIC18.36■□□□□ 0.53
SRP54P61011 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.36■□□□□ 0.53
SRP54P61011 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SRP54P61011 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SRP54P61011 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SRP54P61011 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SRP54P61011 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SRP54P61011 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SRP54P61011 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SRP54P61011 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SRP54P61011 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
SRP54P61011 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SRP54P61011 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms