Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.41■□□□□ 0.22
LMX1BO60663 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.41■□□□□ 0.22
LMX1BO60663 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.41■□□□□ 0.22
LMX1BO60663 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
LMX1BO60663 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC16.41■□□□□ 0.22
LMX1BO60663 AL137013.1-201ENST00000432946 1228 ntBASIC16.41■□□□□ 0.22
LMX1BO60663 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LMX1BO60663 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.41■□□□□ 0.22
LMX1BO60663 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.41■□□□□ 0.22
LMX1BO60663 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.41■□□□□ 0.22
LMX1BO60663 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.41■□□□□ 0.22
LMX1BO60663 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.41■□□□□ 0.22
LMX1BO60663 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.41■□□□□ 0.22
LMX1BO60663 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 KRT8P9-201ENST00000558927 1449 ntBASIC16.41■□□□□ 0.22
LMX1BO60663 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.41■□□□□ 0.22
LMX1BO60663 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
LMX1BO60663 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
LMX1BO60663 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
LMX1BO60663 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.4■□□□□ 0.22
LMX1BO60663 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC16.4■□□□□ 0.22
LMX1BO60663 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
LMX1BO60663 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC16.4■□□□□ 0.22
LMX1BO60663 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.4■□□□□ 0.22
LMX1BO60663 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.4■□□□□ 0.22
LMX1BO60663 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC16.4■□□□□ 0.22
LMX1BO60663 AC113347.1-201ENST00000413321 391 ntBASIC16.4■□□□□ 0.22
LMX1BO60663 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.4■□□□□ 0.22
LMX1BO60663 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC16.4■□□□□ 0.22
LMX1BO60663 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.4■□□□□ 0.22
LMX1BO60663 CR392000.1-201ENST00000624770 1228 ntBASIC16.4■□□□□ 0.22
LMX1BO60663 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.4■□□□□ 0.22
LMX1BO60663 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.4■□□□□ 0.22
LMX1BO60663 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.4■□□□□ 0.22
LMX1BO60663 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.4■□□□□ 0.22
LMX1BO60663 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.4■□□□□ 0.22
LMX1BO60663 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.4■□□□□ 0.22
LMX1BO60663 AL499627.1-201ENST00000569373 2188 ntBASIC16.4■□□□□ 0.22
LMX1BO60663 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
LMX1BO60663 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.4■□□□□ 0.22
LMX1BO60663 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LMX1BO60663 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
LMX1BO60663 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.39■□□□□ 0.22
LMX1BO60663 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1BO60663 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
LMX1BO60663 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1BO60663 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1BO60663 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.39■□□□□ 0.21
LMX1BO60663 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1BO60663 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1BO60663 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1BO60663 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.39■□□□□ 0.21
LMX1BO60663 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.39■□□□□ 0.21
LMX1BO60663 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.39■□□□□ 0.21
LMX1BO60663 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.39■□□□□ 0.21
LMX1BO60663 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.39■□□□□ 0.21
LMX1BO60663 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1BO60663 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1BO60663 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.39■□□□□ 0.21
LMX1BO60663 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.39■□□□□ 0.21
LMX1BO60663 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LMX1BO60663 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.39■□□□□ 0.21
LMX1BO60663 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.39■□□□□ 0.21
LMX1BO60663 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.39■□□□□ 0.21
LMX1BO60663 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1BO60663 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1BO60663 LETM1P2-201ENST00000597330 2178 ntBASIC16.38■□□□□ 0.21
LMX1BO60663 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1BO60663 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.38■□□□□ 0.21
LMX1BO60663 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms