Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.98■□□□□ 0.63
HOXC11O43248 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC11O43248 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.98■□□□□ 0.63
HOXC11O43248 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.98■□□□□ 0.63
HOXC11O43248 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC11O43248 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.98■□□□□ 0.63
HOXC11O43248 KRT18P41-201ENST00000518924 1277 ntBASIC18.98■□□□□ 0.63
HOXC11O43248 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.98■□□□□ 0.63
HOXC11O43248 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
HOXC11O43248 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
HOXC11O43248 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC11O43248 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
HOXC11O43248 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC11O43248 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.98■□□□□ 0.63
HOXC11O43248 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC11O43248 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC11O43248 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC11O43248 AL357033.4-201ENST00000617703 1807 ntBASIC18.97■□□□□ 0.63
HOXC11O43248 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
HOXC11O43248 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.97■□□□□ 0.63
HOXC11O43248 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 MTMR9LP-203ENST00000426597 1545 ntBASIC18.97■□□□□ 0.63
HOXC11O43248 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.97■□□□□ 0.63
HOXC11O43248 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.97■□□□□ 0.63
HOXC11O43248 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.97■□□□□ 0.63
HOXC11O43248 AP003733.1-201ENST00000491725 852 ntBASIC18.97■□□□□ 0.63
HOXC11O43248 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.97■□□□□ 0.63
HOXC11O43248 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
HOXC11O43248 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.97■□□□□ 0.63
HOXC11O43248 AL390719.2-201ENST00000606993 987 ntBASIC18.97■□□□□ 0.63
HOXC11O43248 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.97■□□□□ 0.63
HOXC11O43248 AL691432.3-201ENST00000621860 400 ntBASIC18.97■□□□□ 0.63
HOXC11O43248 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
HOXC11O43248 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.97■□□□□ 0.63
HOXC11O43248 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.97■□□□□ 0.63
HOXC11O43248 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
HOXC11O43248 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.97■□□□□ 0.63
HOXC11O43248 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
HOXC11O43248 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.97■□□□□ 0.63
HOXC11O43248 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC11O43248 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC11O43248 Z83836.1-201ENST00000624605 1642 ntBASIC18.96■□□□□ 0.63
HOXC11O43248 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.96■□□□□ 0.63
HOXC11O43248 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC11O43248 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC11O43248 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
HOXC11O43248 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.96■□□□□ 0.63
HOXC11O43248 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC11O43248 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC11O43248 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC11O43248 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC11O43248 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC11O43248 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HOXC11O43248 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.96■□□□□ 0.63
HOXC11O43248 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.96■□□□□ 0.63
HOXC11O43248 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.96■□□□□ 0.63
HOXC11O43248 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC11O43248 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.96■□□□□ 0.63
HOXC11O43248 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.96■□□□□ 0.63
HOXC11O43248 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC11O43248 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
HOXC11O43248 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC11O43248 KRT8P50-201ENST00000562022 1438 ntBASIC18.96■□□□□ 0.63
HOXC11O43248 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC11O43248 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC11O43248 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.96■□□□□ 0.63
HOXC11O43248 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC11O43248 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC11O43248 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.96■□□□□ 0.63
HOXC11O43248 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC11O43248 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC11O43248 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC11O43248 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC11O43248 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC11O43248 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXC11O43248 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.95■□□□□ 0.62
HOXC11O43248 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC11O43248 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
HOXC11O43248 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
HOXC11O43248 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC11O43248 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC11O43248 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC11O43248 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC11O43248 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC11O43248 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.95■□□□□ 0.62
HOXC11O43248 DRAXINP1-201ENST00000437611 948 ntBASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms