Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC32.28■■■□□ 2.76
CCDC88BA6NC98 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC32.27■■■□□ 2.76
CCDC88BA6NC98 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
CCDC88BA6NC98 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC32.27■■■□□ 2.76
CCDC88BA6NC98 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
CCDC88BA6NC98 MOK-208ENST00000519058 917 ntTSL 2 BASIC32.27■■■□□ 2.76
CCDC88BA6NC98 AC009065.1-201ENST00000564055 1225 ntBASIC32.27■■■□□ 2.76
CCDC88BA6NC98 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC32.27■■■□□ 2.76
CCDC88BA6NC98 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC32.27■■■□□ 2.76
CCDC88BA6NC98 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC32.26■■■□□ 2.76
CCDC88BA6NC98 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC32.26■■■□□ 2.76
CCDC88BA6NC98 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC32.26■■■□□ 2.76
CCDC88BA6NC98 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
CCDC88BA6NC98 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
CCDC88BA6NC98 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC32.26■■■□□ 2.75
CCDC88BA6NC98 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC32.26■■■□□ 2.75
CCDC88BA6NC98 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
CCDC88BA6NC98 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC32.26■■■□□ 2.75
CCDC88BA6NC98 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
CCDC88BA6NC98 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC32.26■■■□□ 2.75
CCDC88BA6NC98 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
CCDC88BA6NC98 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC32.26■■■□□ 2.75
CCDC88BA6NC98 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
CCDC88BA6NC98 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
CCDC88BA6NC98 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC32.26■■■□□ 2.75
CCDC88BA6NC98 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC32.25■■■□□ 2.75
CCDC88BA6NC98 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
CCDC88BA6NC98 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
CCDC88BA6NC98 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC32.25■■■□□ 2.75
CCDC88BA6NC98 TLE1-202ENST00000376484 666 ntTSL 3 BASIC32.25■■■□□ 2.75
CCDC88BA6NC98 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC32.25■■■□□ 2.75
CCDC88BA6NC98 POM121L3P-201ENST00000419331 1163 ntBASIC32.25■■■□□ 2.75
CCDC88BA6NC98 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC32.25■■■□□ 2.75
CCDC88BA6NC98 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC32.25■■■□□ 2.75
CCDC88BA6NC98 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC32.25■■■□□ 2.75
CCDC88BA6NC98 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
CCDC88BA6NC98 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC32.25■■■□□ 2.75
CCDC88BA6NC98 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
CCDC88BA6NC98 FAM197Y8-203ENST00000450145 560 ntBASIC32.24■■■□□ 2.75
CCDC88BA6NC98 MINOS1P3-201ENST00000457048 203 ntBASIC32.24■■■□□ 2.75
CCDC88BA6NC98 AC096582.2-201ENST00000510860 516 ntBASIC32.24■■■□□ 2.75
CCDC88BA6NC98 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC32.24■■■□□ 2.75
CCDC88BA6NC98 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
CCDC88BA6NC98 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
CCDC88BA6NC98 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC32.24■■■□□ 2.75
CCDC88BA6NC98 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC32.24■■■□□ 2.75
CCDC88BA6NC98 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
CCDC88BA6NC98 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC32.24■■■□□ 2.75
CCDC88BA6NC98 MED22-202ENST00000371999 987 ntTSL 3 BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 AL031284.1-201ENST00000419297 478 ntBASIC32.23■■■□□ 2.75
CCDC88BA6NC98 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 AC011840.4-201ENST00000578471 627 ntBASIC32.23■■■□□ 2.75
CCDC88BA6NC98 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 AC139530.3-201ENST00000620344 690 ntBASIC32.23■■■□□ 2.75
CCDC88BA6NC98 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 AC113404.2-201ENST00000507884 177 ntBASIC32.23■■■□□ 2.75
CCDC88BA6NC98 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC32.23■■■□□ 2.75
CCDC88BA6NC98 AL049840.3-201ENST00000602669 611 ntBASIC32.23■■■□□ 2.75
CCDC88BA6NC98 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 AC008608.2-201ENST00000606089 416 ntBASIC32.22■■■□□ 2.75
CCDC88BA6NC98 ABBA01031661.1-201ENST00000634362 1253 ntBASIC32.22■■■□□ 2.75
CCDC88BA6NC98 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC32.22■■■□□ 2.75
CCDC88BA6NC98 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC32.21■■■□□ 2.75
CCDC88BA6NC98 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC32.21■■■□□ 2.75
CCDC88BA6NC98 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms