Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
USH1CQ9Y6N9 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.6■□□□□ 0.57
USH1CQ9Y6N9 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 RPS2P52-201ENST00000469610 820 ntBASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 AC087623.3-201ENST00000607047 1098 ntBASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USH1CQ9Y6N9 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.57
USH1CQ9Y6N9 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
USH1CQ9Y6N9 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.58■□□□□ 0.57
USH1CQ9Y6N9 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
USH1CQ9Y6N9 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
USH1CQ9Y6N9 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
USH1CQ9Y6N9 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
USH1CQ9Y6N9 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.58■□□□□ 0.57
USH1CQ9Y6N9 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
USH1CQ9Y6N9 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 AC012317.2-201ENST00000623305 2251 ntBASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms